miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 3' -55.5 NC_002512.2 + 7293 0.66 0.974389
Target:  5'- -----cGGGgGCCGGAcaggccuccuccgcgACgGCGGGCCg -3'
miRNA:   3'- ucauaaUCUgCGGCCU---------------UG-CGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 190752 0.66 0.974389
Target:  5'- -----cGGAgGCCGGGACGCucuucuacguggaccGGGUCa -3'
miRNA:   3'- ucauaaUCUgCGGCCUUGCG---------------CCCGGg -5'
9046 3' -55.5 NC_002512.2 + 194892 0.66 0.973362
Target:  5'- ----cUGG-UGCCcuucuccuccgcGGGACGCGaGGCCCa -3'
miRNA:   3'- ucauaAUCuGCGG------------CCUUGCGC-CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 98269 0.66 0.973362
Target:  5'- cGUcUUcGugGCCGG---GCGGGCCg -3'
miRNA:   3'- uCAuAAuCugCGGCCuugCGCCCGGg -5'
9046 3' -55.5 NC_002512.2 + 209947 0.66 0.973362
Target:  5'- cGUGcugcuCGaCCGG-GCGCGGGUCCu -3'
miRNA:   3'- uCAUaaucuGC-GGCCuUGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 120637 0.66 0.973362
Target:  5'- cGGgacgGGACGCCGGGgGCGCGGa--- -3'
miRNA:   3'- -UCauaaUCUGCGGCCU-UGCGCCcggg -5'
9046 3' -55.5 NC_002512.2 + 102433 0.66 0.973362
Target:  5'- gAGUAUUAGAUGUgaCGGAgaggACGCGgcggaGGUUCg -3'
miRNA:   3'- -UCAUAAUCUGCG--GCCU----UGCGC-----CCGGG- -5'
9046 3' -55.5 NC_002512.2 + 156466 0.66 0.973362
Target:  5'- cGGg---GGACuCgGGGGCgGCGGGCUCg -3'
miRNA:   3'- -UCauaaUCUGcGgCCUUG-CGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 85563 0.66 0.973362
Target:  5'- gAGg---AGGCGCgGGAGCGgGagcGGCCg -3'
miRNA:   3'- -UCauaaUCUGCGgCCUUGCgC---CCGGg -5'
9046 3' -55.5 NC_002512.2 + 31251 0.66 0.973362
Target:  5'- -----aGGGCGCUGauGGACGCGGacguguacguguGCCCg -3'
miRNA:   3'- ucauaaUCUGCGGC--CUUGCGCC------------CGGG- -5'
9046 3' -55.5 NC_002512.2 + 109055 0.66 0.973362
Target:  5'- cGGg---GGACGaCCGGAcccgccGCGUcccGGGUCCg -3'
miRNA:   3'- -UCauaaUCUGC-GGCCU------UGCG---CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 102054 0.66 0.972572
Target:  5'- -----cGGACGCCgccgacgaccucccGGAGC-CGGGaCCCg -3'
miRNA:   3'- ucauaaUCUGCGG--------------CCUUGcGCCC-GGG- -5'
9046 3' -55.5 NC_002512.2 + 82483 0.66 0.970663
Target:  5'- -----cAGACGCCGuuuGACGCcGGUCCu -3'
miRNA:   3'- ucauaaUCUGCGGCc--UUGCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 140757 0.66 0.970663
Target:  5'- -----aAGACGCCGuGugaGCaGGCCCu -3'
miRNA:   3'- ucauaaUCUGCGGC-CuugCGcCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 226750 0.66 0.970663
Target:  5'- -----gAGACGgCGGAgGCGUGcGGCCg -3'
miRNA:   3'- ucauaaUCUGCgGCCU-UGCGC-CCGGg -5'
9046 3' -55.5 NC_002512.2 + 17860 0.66 0.970663
Target:  5'- -----cGGGCG-CGGugcucGCGCaGGGCCCg -3'
miRNA:   3'- ucauaaUCUGCgGCCu----UGCG-CCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 204978 0.66 0.970663
Target:  5'- ------cGACGCCGcGGGCGaCGGGgaCCg -3'
miRNA:   3'- ucauaauCUGCGGC-CUUGC-GCCCg-GG- -5'
9046 3' -55.5 NC_002512.2 + 205047 0.66 0.970663
Target:  5'- ------cGcCGaCCGGc-CGCGGGCCCg -3'
miRNA:   3'- ucauaauCuGC-GGCCuuGCGCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 111370 0.66 0.970663
Target:  5'- -----cGGACGCCGGA----GGGCCUc -3'
miRNA:   3'- ucauaaUCUGCGGCCUugcgCCCGGG- -5'
9046 3' -55.5 NC_002512.2 + 171173 0.66 0.970663
Target:  5'- ------cGACGCUauGGAacuccagaagaACGCGGGCgCCg -3'
miRNA:   3'- ucauaauCUGCGG--CCU-----------UGCGCCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.