miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 99390 0.66 0.891672
Target:  5'- cGGCCUCgcaGCCCggcuGCgACGGAucgGGCCCCg- -3'
miRNA:   3'- -UUGGAG---UGGG----UGgUGCCU---UUGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 141411 0.66 0.891672
Target:  5'- gGAUCg-ACCCacACCGCGGucuguucguacGAGCCCCCGc -3'
miRNA:   3'- -UUGGagUGGG--UGGUGCC-----------UUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 113700 0.66 0.891672
Target:  5'- uGCCUgGCCCGCagCGCGuGGAACUcgCCCGg -3'
miRNA:   3'- uUGGAgUGGGUG--GUGC-CUUUGG--GGGU- -5'
9047 3' -58.4 NC_002512.2 + 153841 0.66 0.891672
Target:  5'- cGCUaCGCUCGCCAaugGGAuACCCUCAa -3'
miRNA:   3'- uUGGaGUGGGUGGUg--CCUuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 197317 0.66 0.891672
Target:  5'- cGACCccggCACCCGCgGCgcccggcggcuGGAGAagauCCCCCAc -3'
miRNA:   3'- -UUGGa---GUGGGUGgUG-----------CCUUU----GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 139553 0.66 0.891024
Target:  5'- -uCCUCGCCaacgucucaACCugGGAcagcgcuAACCUCCGu -3'
miRNA:   3'- uuGGAGUGGg--------UGGugCCU-------UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 76822 0.66 0.891024
Target:  5'- cGCCUCGaCCGCCGacccgacCGGGAccGCUCCCGc -3'
miRNA:   3'- uUGGAGUgGGUGGU-------GCCUU--UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 91640 0.66 0.885095
Target:  5'- uGCUgaaCACCCACC-CGGugaaggugguGACCUCCAg -3'
miRNA:   3'- uUGGa--GUGGGUGGuGCCu---------UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 214980 0.66 0.885095
Target:  5'- aGACCgaCGCCgACCuCGGGAugCCCg- -3'
miRNA:   3'- -UUGGa-GUGGgUGGuGCCUUugGGGgu -5'
9047 3' -58.4 NC_002512.2 + 74507 0.66 0.885095
Target:  5'- gGACCUCGCCaGCCucGCGGu--CCCgCCu -3'
miRNA:   3'- -UUGGAGUGGgUGG--UGCCuuuGGG-GGu -5'
9047 3' -58.4 NC_002512.2 + 138254 0.66 0.885095
Target:  5'- cGCCgaACCCGCU--GGAGAUCCCCGc -3'
miRNA:   3'- uUGGagUGGGUGGugCCUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 29526 0.66 0.885095
Target:  5'- -cCCUCACCCcCCGCcccgucCCCCCGu -3'
miRNA:   3'- uuGGAGUGGGuGGUGccuuu-GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 108164 0.66 0.878308
Target:  5'- gGGCCUCGuCagCAUCACGGucGCCCCg- -3'
miRNA:   3'- -UUGGAGU-Gg-GUGGUGCCuuUGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 134745 0.66 0.878308
Target:  5'- -uCCUCgACCCGCCGgGGcGGACCgUCCGg -3'
miRNA:   3'- uuGGAG-UGGGUGGUgCC-UUUGG-GGGU- -5'
9047 3' -58.4 NC_002512.2 + 37198 0.66 0.878308
Target:  5'- cGGCCUCggcGCgCCGCCACaccu-CCCCCAg -3'
miRNA:   3'- -UUGGAG---UG-GGUGGUGccuuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 7635 0.66 0.878308
Target:  5'- aGGCCaUCacgagACCCGCCACGGcGACgaaggacgcggCCCCGa -3'
miRNA:   3'- -UUGG-AG-----UGGGUGGUGCCuUUG-----------GGGGU- -5'
9047 3' -58.4 NC_002512.2 + 195342 0.66 0.878308
Target:  5'- uGCgUgACCCGgCGcCGGGAACCCCgGg -3'
miRNA:   3'- uUGgAgUGGGUgGU-GCCUUUGGGGgU- -5'
9047 3' -58.4 NC_002512.2 + 165251 0.66 0.878308
Target:  5'- cGACCUCGCggaCGCguCGcGGAGCCCCgGa -3'
miRNA:   3'- -UUGGAGUGg--GUGguGC-CUUUGGGGgU- -5'
9047 3' -58.4 NC_002512.2 + 90063 0.66 0.878308
Target:  5'- --aCUCGCCCAcguCCuuGGAcacccgaccgaGGCCCCCGc -3'
miRNA:   3'- uugGAGUGGGU---GGugCCU-----------UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 126794 0.66 0.878308
Target:  5'- uGCCgCGCCCGuCCcCGGGAucGCCuCCCGu -3'
miRNA:   3'- uUGGaGUGGGU-GGuGCCUU--UGG-GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.