miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 120807 0.66 0.919211
Target:  5'- gGCG-GcGGUCUCucggacccgggaCGCGGCGGguccggUCGUCCc -3'
miRNA:   3'- gCGCgC-CCAGAG------------GCGCUGCU------AGCAGG- -5'
9047 5' -59 NC_002512.2 + 43040 0.66 0.919211
Target:  5'- gGCGCaGGUcCUCgGCGACGcgCagggCCu -3'
miRNA:   3'- gCGCGcCCA-GAGgCGCUGCuaGca--GG- -5'
9047 5' -59 NC_002512.2 + 34843 0.66 0.919211
Target:  5'- cCGCccGCGGG---CCGCGGCGGcuucuUCGUCg -3'
miRNA:   3'- -GCG--CGCCCagaGGCGCUGCU-----AGCAGg -5'
9047 5' -59 NC_002512.2 + 110416 0.66 0.919211
Target:  5'- aCGaacaGCGGcugCUCCGCcACGAU-GUCCg -3'
miRNA:   3'- -GCg---CGCCca-GAGGCGcUGCUAgCAGG- -5'
9047 5' -59 NC_002512.2 + 93632 0.66 0.919211
Target:  5'- gGCGCGuG-CUCgGUGGCGuugUGUCCg -3'
miRNA:   3'- gCGCGCcCaGAGgCGCUGCua-GCAGG- -5'
9047 5' -59 NC_002512.2 + 99390 0.66 0.919211
Target:  5'- aGCGUcgGGGUCcggacucCCGgGGCGGcuUCGUCUc -3'
miRNA:   3'- gCGCG--CCCAGa------GGCgCUGCU--AGCAGG- -5'
9047 5' -59 NC_002512.2 + 131297 0.66 0.919211
Target:  5'- aCGCGCGGGaggUCGgGAaGAUCcUCCg -3'
miRNA:   3'- -GCGCGCCCagaGGCgCUgCUAGcAGG- -5'
9047 5' -59 NC_002512.2 + 129099 0.66 0.919211
Target:  5'- aCGgGCGGcGUCU--GCGGCGggCgGUCCu -3'
miRNA:   3'- -GCgCGCC-CAGAggCGCUGCuaG-CAGG- -5'
9047 5' -59 NC_002512.2 + 130287 0.66 0.919211
Target:  5'- aGCGCGGGgC-CCGgGACGugcCGUacgCCg -3'
miRNA:   3'- gCGCGCCCaGaGGCgCUGCua-GCA---GG- -5'
9047 5' -59 NC_002512.2 + 100651 0.66 0.919211
Target:  5'- cCGCGCaGcaGUC-CCGCGAuCGcgCGUUCg -3'
miRNA:   3'- -GCGCGcC--CAGaGGCGCU-GCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 184794 0.66 0.91921
Target:  5'- gGCcCGGGcCUCCGCGGgGAgaccCuUCCg -3'
miRNA:   3'- gCGcGCCCaGAGGCGCUgCUa---GcAGG- -5'
9047 5' -59 NC_002512.2 + 171452 0.66 0.91921
Target:  5'- aCGCcuGCGGaGUCugcagcgcgUCCGCGACuucaaCGUCCu -3'
miRNA:   3'- -GCG--CGCC-CAG---------AGGCGCUGcua--GCAGG- -5'
9047 5' -59 NC_002512.2 + 201435 0.66 0.91921
Target:  5'- uCG-GCGGGUCgUCGCGAUcucggccucgaGGUgGUCCc -3'
miRNA:   3'- -GCgCGCCCAGaGGCGCUG-----------CUAgCAGG- -5'
9047 5' -59 NC_002512.2 + 219814 0.66 0.91921
Target:  5'- aCGCGCGGGg---CGCGACagggGGUCGgucggggggUCCg -3'
miRNA:   3'- -GCGCGCCCagagGCGCUG----CUAGC---------AGG- -5'
9047 5' -59 NC_002512.2 + 216817 0.66 0.918682
Target:  5'- gCGuCGCGGGUCggguacggCUGCGucucgaucaccaGCGugaucucgcccucGUCGUCCg -3'
miRNA:   3'- -GC-GCGCCCAGa-------GGCGC------------UGC-------------UAGCAGG- -5'
9047 5' -59 NC_002512.2 + 206446 0.66 0.918682
Target:  5'- gGCGCGGugaaguaGUCgCUGCGcACGGccagCGUCCc -3'
miRNA:   3'- gCGCGCC-------CAGaGGCGC-UGCUa---GCAGG- -5'
9047 5' -59 NC_002512.2 + 177143 0.66 0.916009
Target:  5'- cCGCGCGuucugcugcaGcGUCUCCGCG-CGcuucugcucccccgcGUCGUUCg -3'
miRNA:   3'- -GCGCGC----------C-CAGAGGCGCuGC---------------UAGCAGG- -5'
9047 5' -59 NC_002512.2 + 75643 0.66 0.913833
Target:  5'- -aCGCGGGcgCU-CGCG-CGcgCGUCCu -3'
miRNA:   3'- gcGCGCCCa-GAgGCGCuGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 21077 0.66 0.913833
Target:  5'- aCGgGCGGcGgucccgCUCCGgGGCGAcCG-CCg -3'
miRNA:   3'- -GCgCGCC-Ca-----GAGGCgCUGCUaGCaGG- -5'
9047 5' -59 NC_002512.2 + 139258 0.66 0.913833
Target:  5'- gGCGcCGGGUCgcgCCGCccGGCGcgCGg-- -3'
miRNA:   3'- gCGC-GCCCAGa--GGCG--CUGCuaGCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.