miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 22325 0.66 0.846797
Target:  5'- aCGCga-GGGACGCGaGgGACGCgagggaggagucgcaGCGGg -3'
miRNA:   3'- -GCGagcUCCUGCGC-CgCUGCGa--------------CGCC- -5'
9049 3' -61 NC_002512.2 + 42579 0.66 0.846055
Target:  5'- gCGCcgCGAGG-CGa-GCGGCGggGCGGa -3'
miRNA:   3'- -GCGa-GCUCCuGCgcCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 104774 0.66 0.846055
Target:  5'- cCGgUCGGacGGcGCGUGGCGggguccGCGCgcgGCGGg -3'
miRNA:   3'- -GCgAGCU--CC-UGCGCCGC------UGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 141273 0.66 0.846055
Target:  5'- aCGUUCGucccGACGcCGGCcGCGCgcacgGCGGc -3'
miRNA:   3'- -GCGAGCuc--CUGC-GCCGcUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 128606 0.66 0.845312
Target:  5'- gGCUCGAGGAacugaagaucaucCGCcuGGCcugucuccuGACGCUGggcCGGg -3'
miRNA:   3'- gCGAGCUCCU-------------GCG--CCG---------CUGCGAC---GCC- -5'
9049 3' -61 NC_002512.2 + 47896 0.66 0.841568
Target:  5'- ---cCGAGGAcgcCGCcaccuacgugcggauGGUGACGUUGCGGu -3'
miRNA:   3'- gcgaGCUCCU---GCG---------------CCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 99885 0.66 0.838544
Target:  5'- gCGCggacaCGGGcACGCGGCGccgccgGCGCUcccgGCGGu -3'
miRNA:   3'- -GCGa----GCUCcUGCGCCGC------UGCGA----CGCC- -5'
9049 3' -61 NC_002512.2 + 207511 0.66 0.838544
Target:  5'- cCGCgaccgacgaCGAGGACGgGGCcgcguccuccCGCUGCGa -3'
miRNA:   3'- -GCGa--------GCUCCUGCgCCGcu--------GCGACGCc -5'
9049 3' -61 NC_002512.2 + 94785 0.66 0.838544
Target:  5'- aGUUCuccAGGGCGCGcaCGACGCggagacGCGGg -3'
miRNA:   3'- gCGAGc--UCCUGCGCc-GCUGCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 102443 0.66 0.838544
Target:  5'- uGUgacggaGAGGACGCGGCGGagGUUcGCGa -3'
miRNA:   3'- gCGag----CUCCUGCGCCGCUg-CGA-CGCc -5'
9049 3' -61 NC_002512.2 + 45521 0.66 0.838544
Target:  5'- gCGCccgCGGcGGGCgGCGGCGGCGacuUGgGGu -3'
miRNA:   3'- -GCGa--GCU-CCUG-CGCCGCUGCg--ACgCC- -5'
9049 3' -61 NC_002512.2 + 152294 0.66 0.838544
Target:  5'- gGCgauccgCGAGGGacCGCucGGCGugGCU-CGGa -3'
miRNA:   3'- gCGa-----GCUCCU--GCG--CCGCugCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 9369 0.66 0.838544
Target:  5'- aGCUccuccagguccCGGGcGACGCaGGCcacggccuCGCUGCGGg -3'
miRNA:   3'- gCGA-----------GCUC-CUGCG-CCGcu------GCGACGCC- -5'
9049 3' -61 NC_002512.2 + 18950 0.66 0.838544
Target:  5'- gGcCUCGGGGcggacugcauCGCGGCGAUGaUGcCGGa -3'
miRNA:   3'- gC-GAGCUCCu---------GCGCCGCUGCgAC-GCC- -5'
9049 3' -61 NC_002512.2 + 71771 0.66 0.838544
Target:  5'- uGC-CGAGGAaGCGGuUGugGaaGCGGu -3'
miRNA:   3'- gCGaGCUCCUgCGCC-GCugCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 87303 0.66 0.838544
Target:  5'- aGUcCGAGGAgGCGGCcACGCagacgaugagGUGGa -3'
miRNA:   3'- gCGaGCUCCUgCGCCGcUGCGa---------CGCC- -5'
9049 3' -61 NC_002512.2 + 138297 0.66 0.838544
Target:  5'- aGCUCGuGGugcCGCGcGCGcuCGUaGCGGa -3'
miRNA:   3'- gCGAGCuCCu--GCGC-CGCu-GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 102684 0.66 0.837784
Target:  5'- cCGCUguccgggGAGGACGUGGCugagcguGACGUuagugGCGGc -3'
miRNA:   3'- -GCGAg------CUCCUGCGCCG-------CUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 40032 0.66 0.830871
Target:  5'- aCGCgcgaCGAGGuuGCGGaCGuuuCGCccGCGGg -3'
miRNA:   3'- -GCGa---GCUCCugCGCC-GCu--GCGa-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.