miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 5' -52.3 NC_002512.2 + 99017 0.66 0.994823
Target:  5'- aCGa-GCGACUcgcGCCcGGUGGGgGCCUCg -3'
miRNA:   3'- -GCggCGUUGA---UGGaCUACUUgUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 225803 0.66 0.994823
Target:  5'- gGCCGCgGGCgGCCgGGUGGccugGgACCUCg -3'
miRNA:   3'- gCGGCG-UUGaUGGaCUACU----UgUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 100765 0.66 0.994823
Target:  5'- aGCUGguGCUcggaGCgCUGcacccgGAACGCCUCg -3'
miRNA:   3'- gCGGCguUGA----UG-GACua----CUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 55438 0.66 0.994823
Target:  5'- uCGUCGacgAACUACgUGGUGAcCACCg- -3'
miRNA:   3'- -GCGGCg--UUGAUGgACUACUuGUGGag -5'
9049 5' -52.3 NC_002512.2 + 123939 0.66 0.994016
Target:  5'- gGCCGUcaGACUcguGCCgGcgGGAC-CCUCg -3'
miRNA:   3'- gCGGCG--UUGA---UGGaCuaCUUGuGGAG- -5'
9049 5' -52.3 NC_002512.2 + 72793 0.66 0.994016
Target:  5'- uCGCCGgGACggGCCcGccGUGGGCGCCg- -3'
miRNA:   3'- -GCGGCgUUGa-UGGaC--UACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 220558 0.66 0.994016
Target:  5'- aCGCCGU--CUACCUGGccguGCGCCg- -3'
miRNA:   3'- -GCGGCGuuGAUGGACUacu-UGUGGag -5'
9049 5' -52.3 NC_002512.2 + 172648 0.66 0.994016
Target:  5'- gGCgGUAGCgGCCUGcggGGACGCC-Cg -3'
miRNA:   3'- gCGgCGUUGaUGGACua-CUUGUGGaG- -5'
9049 5' -52.3 NC_002512.2 + 149891 0.66 0.99311
Target:  5'- gGCUGCcGCUGCCUGG-----ACCUCc -3'
miRNA:   3'- gCGGCGuUGAUGGACUacuugUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 170894 0.66 0.99311
Target:  5'- uCGCCGaCGGCcGCCUGGacacgcuGCGCUUCg -3'
miRNA:   3'- -GCGGC-GUUGaUGGACUacu----UGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 62925 0.66 0.99311
Target:  5'- gCGCCaGCuGCUGCUUGuccAUGAACAUC-Cg -3'
miRNA:   3'- -GCGG-CGuUGAUGGAC---UACUUGUGGaG- -5'
9049 5' -52.3 NC_002512.2 + 126364 0.66 0.99311
Target:  5'- gGCgGCAACUuCCUGcUGGuCACCa- -3'
miRNA:   3'- gCGgCGUUGAuGGACuACUuGUGGag -5'
9049 5' -52.3 NC_002512.2 + 14834 0.66 0.99311
Target:  5'- aCGCCGcCGACga-C-GGUGAGCuCCUCg -3'
miRNA:   3'- -GCGGC-GUUGaugGaCUACUUGuGGAG- -5'
9049 5' -52.3 NC_002512.2 + 95648 0.66 0.99311
Target:  5'- -uCCGU--CUGCCUGAggagGAACGCCg- -3'
miRNA:   3'- gcGGCGuuGAUGGACUa---CUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 30820 0.66 0.99311
Target:  5'- gGCCugGACUACCaacgGcUGAGCACCUUc -3'
miRNA:   3'- gCGGcgUUGAUGGa---CuACUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 174430 0.66 0.99311
Target:  5'- cCGUCGgGGCUACCacGGUGGuCACCa- -3'
miRNA:   3'- -GCGGCgUUGAUGGa-CUACUuGUGGag -5'
9049 5' -52.3 NC_002512.2 + 124817 0.66 0.993014
Target:  5'- cCGCCGgcuucuuCGGCUGCgUGccGGACACCg- -3'
miRNA:   3'- -GCGGC-------GUUGAUGgACuaCUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 118489 0.66 0.993014
Target:  5'- gCGCCG-AGCUGCCgggGcgGGACGgcuacgaggucuuCCUCg -3'
miRNA:   3'- -GCGGCgUUGAUGGa--CuaCUUGU-------------GGAG- -5'
9049 5' -52.3 NC_002512.2 + 26694 0.66 0.992818
Target:  5'- aCGCCGUgcuggcggugaccuGGCUGgcgucCCUGAUGuGCGCgUCg -3'
miRNA:   3'- -GCGGCG--------------UUGAU-----GGACUACuUGUGgAG- -5'
9049 5' -52.3 NC_002512.2 + 23693 0.66 0.992098
Target:  5'- cCGCCGCuGCUuCCUGGUGuccguGCcCCa- -3'
miRNA:   3'- -GCGGCGuUGAuGGACUACu----UGuGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.