miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 201649 0.65 0.709835
Target:  5'- cGCgGCgCGACGgccCCGGCcgcgguuccuucuUcgGCGAGGGCg -3'
miRNA:   3'- -CGgCGgGCUGC---GGCCG-------------A--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 137222 0.65 0.707996
Target:  5'- aGCCGgaucucuccccgguCCCGACGaggacaCCGGCgGCGAGcGCUg -3'
miRNA:   3'- -CGGC--------------GGGCUGC------GGCCGaUGCUCcCGA- -5'
9051 5' -63.8 NC_002512.2 + 146689 0.65 0.707996
Target:  5'- cCCGCCCcGCGCgCGGacgGCGAcggagacgacggcgGGGCg -3'
miRNA:   3'- cGGCGGGcUGCG-GCCga-UGCU--------------CCCGa -5'
9051 5' -63.8 NC_002512.2 + 121064 0.65 0.707076
Target:  5'- cGCCGCCCGAgGCgCGGaggaagcggacccacGCGGagauccuguacucGGGCUa -3'
miRNA:   3'- -CGGCGGGCUgCG-GCCga-------------UGCU-------------CCCGA- -5'
9051 5' -63.8 NC_002512.2 + 16464 0.66 0.705233
Target:  5'- gGCCGCCuCGggcggagacgacagaGCGUaUGGCgcaGCGGGGGCc -3'
miRNA:   3'- -CGGCGG-GC---------------UGCG-GCCGa--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 105141 0.66 0.701542
Target:  5'- cGCCGCaCCcgacgGACGCCGuGUagaucuugGCGAGGGa- -3'
miRNA:   3'- -CGGCG-GG-----CUGCGGC-CGa-------UGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 116973 0.66 0.701542
Target:  5'- gGCCG-CCGACGCCccguccgggcgGGCcgACGgccgcacgcAGGGCg -3'
miRNA:   3'- -CGGCgGGCUGCGG-----------CCGa-UGC---------UCCCGa -5'
9051 5' -63.8 NC_002512.2 + 27014 0.66 0.701542
Target:  5'- cGCCGUUCGugGCCaucaugaGCUACGAcaGCUa -3'
miRNA:   3'- -CGGCGGGCugCGGc------CGAUGCUccCGA- -5'
9051 5' -63.8 NC_002512.2 + 206546 0.66 0.701542
Target:  5'- cGCCGCaCuCGuacacCGCCGGCggccCG-GGGCg -3'
miRNA:   3'- -CGGCG-G-GCu----GCGGCCGau--GCuCCCGa -5'
9051 5' -63.8 NC_002512.2 + 147605 0.66 0.701542
Target:  5'- cGUCGCCuCGAC-CCGaccCUcgACGGGGGCg -3'
miRNA:   3'- -CGGCGG-GCUGcGGCc--GA--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 10349 0.66 0.701542
Target:  5'- cCCGUCCGgugggcACGCCGaCgaagACGGGGGUg -3'
miRNA:   3'- cGGCGGGC------UGCGGCcGa---UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 49587 0.66 0.701542
Target:  5'- cGCCGCU--GCGCCuGU--CGAGGGCg -3'
miRNA:   3'- -CGGCGGgcUGCGGcCGauGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 126567 0.66 0.701542
Target:  5'- cGCCGCCCGG-GCCucGGCcguccuguccUACGAcGGCc -3'
miRNA:   3'- -CGGCGGGCUgCGG--CCG----------AUGCUcCCGa -5'
9051 5' -63.8 NC_002512.2 + 207765 0.66 0.69228
Target:  5'- aGCCGCCgcCGugG-UGGUUGCGGGacGGCg -3'
miRNA:   3'- -CGGCGG--GCugCgGCCGAUGCUC--CCGa -5'
9051 5' -63.8 NC_002512.2 + 136429 0.66 0.69228
Target:  5'- uCCGCCaCGAUcCCGGCgcuCGAGcGCUg -3'
miRNA:   3'- cGGCGG-GCUGcGGCCGau-GCUCcCGA- -5'
9051 5' -63.8 NC_002512.2 + 70672 0.66 0.69228
Target:  5'- gGCCGggaggggacuuCCCGGgGaCCGGCcggGCGGGGGaCg -3'
miRNA:   3'- -CGGC-----------GGGCUgC-GGCCGa--UGCUCCC-Ga -5'
9051 5' -63.8 NC_002512.2 + 178668 0.66 0.69228
Target:  5'- --gGCCCagagGACcCCGGCUaccacACGAGGGUUg -3'
miRNA:   3'- cggCGGG----CUGcGGCCGA-----UGCUCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 227600 0.66 0.69228
Target:  5'- cGCCaCCCGcaGCgGCCGGaggGCGGGcGGCg -3'
miRNA:   3'- -CGGcGGGC--UG-CGGCCga-UGCUC-CCGa -5'
9051 5' -63.8 NC_002512.2 + 227677 0.66 0.69228
Target:  5'- cGCgGCUggCGACGCUGcGCaACGGGGGa- -3'
miRNA:   3'- -CGgCGG--GCUGCGGC-CGaUGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 106628 0.66 0.69228
Target:  5'- uCCGCCgggggguagCGGCGCCGGCUcgGCGAGu--- -3'
miRNA:   3'- cGGCGG---------GCUGCGGCCGA--UGCUCccga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.