miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 166334 0.66 0.931682
Target:  5'- cCCCUCCGGagg-GUCAUCuUCGACGg- -3'
miRNA:   3'- -GGGAGGUCgaggCAGUGG-AGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 36445 0.66 0.931682
Target:  5'- uCCCgccaCCGGCggccgCgGUCGCgCUCGuaguCGUCg -3'
miRNA:   3'- -GGGa---GGUCGa----GgCAGUG-GAGCu---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 194943 0.66 0.931682
Target:  5'- gCCgCUCC-GCUccCCGUCGCCgCGAccccgcCGUCg -3'
miRNA:   3'- -GG-GAGGuCGA--GGCAGUGGaGCU------GCAG- -5'
9055 5' -57.9 NC_002512.2 + 185752 0.66 0.931682
Target:  5'- aCCUCUGG-UCCGUCgACCUCGucuACGcCu -3'
miRNA:   3'- gGGAGGUCgAGGCAG-UGGAGC---UGCaG- -5'
9055 5' -57.9 NC_002512.2 + 103217 0.66 0.931682
Target:  5'- aUCCgaggCGGCUCgCGUCGCCgcccgUCGACGg- -3'
miRNA:   3'- -GGGag--GUCGAG-GCAGUGG-----AGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 110482 0.66 0.931682
Target:  5'- uUgUUCAGCUCC-UC-CgUCGGCGUCa -3'
miRNA:   3'- gGgAGGUCGAGGcAGuGgAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 129030 0.66 0.931682
Target:  5'- aCCUgCAGUgcggcgUCGcgCACUUUGACGUCa -3'
miRNA:   3'- gGGAgGUCGa-----GGCa-GUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 57482 0.66 0.931682
Target:  5'- -gCUCCAGCcgggCgGUCAUCcCGGCGUg -3'
miRNA:   3'- ggGAGGUCGa---GgCAGUGGaGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 108531 0.66 0.931682
Target:  5'- gCCCUCUccgccguccaacGGCcCCGcCGCCggagCGAgGUCa -3'
miRNA:   3'- -GGGAGG------------UCGaGGCaGUGGa---GCUgCAG- -5'
9055 5' -57.9 NC_002512.2 + 186118 0.66 0.926728
Target:  5'- gCCC-CgAGCUCucccuCGUCugcaauagcuuCCUCGGCGUCu -3'
miRNA:   3'- -GGGaGgUCGAG-----GCAGu----------GGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 209463 0.66 0.926728
Target:  5'- aUCUUCGGCUCCGgcgaacaccggCugCUCGucgcCGUCu -3'
miRNA:   3'- gGGAGGUCGAGGCa----------GugGAGCu---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 184457 0.66 0.926728
Target:  5'- uCCCUCCGuCUCCGaCAUCguUCGAUGa- -3'
miRNA:   3'- -GGGAGGUcGAGGCaGUGG--AGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 76765 0.66 0.926728
Target:  5'- gCCCgUCCcGC-CCGUCGCCacCGAauCGUCc -3'
miRNA:   3'- -GGG-AGGuCGaGGCAGUGGa-GCU--GCAG- -5'
9055 5' -57.9 NC_002512.2 + 63433 0.66 0.926728
Target:  5'- gCCCUCgAGCccggcgCCGUCGCCcccggaggaCGGCGg- -3'
miRNA:   3'- -GGGAGgUCGa-----GGCAGUGGa--------GCUGCag -5'
9055 5' -57.9 NC_002512.2 + 108101 0.66 0.926728
Target:  5'- gUCUUCGGCgUCCc-CGCCUCGGCGg- -3'
miRNA:   3'- gGGAGGUCG-AGGcaGUGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 106764 0.66 0.9252
Target:  5'- gCgUCCGGCUCuCGgcccgcggCACUggucggggucggggUCGACGUCg -3'
miRNA:   3'- gGgAGGUCGAG-GCa-------GUGG--------------AGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 67940 0.66 0.923652
Target:  5'- uCCCUCCGGaCggagaggggucgcgCCGguUCGCCgUGGCGUCc -3'
miRNA:   3'- -GGGAGGUC-Ga-------------GGC--AGUGGaGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 105909 0.66 0.923652
Target:  5'- gCUCUCCGGCgUCCGguggguCCUCGGggaggcggacucguuCGUCa -3'
miRNA:   3'- -GGGAGGUCG-AGGCagu---GGAGCU---------------GCAG- -5'
9055 5' -57.9 NC_002512.2 + 140641 0.66 0.922085
Target:  5'- aCCUUCauccgcgagAGCUCCGUCGCCgucaccaacaagaugCGggccuGCGUCa -3'
miRNA:   3'- gGGAGG---------UCGAGGCAGUGGa--------------GC-----UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 112011 0.66 0.921558
Target:  5'- gCCC-CCGGCgUCCGUCuugcgGCCga-ACGUCa -3'
miRNA:   3'- -GGGaGGUCG-AGGCAG-----UGGagcUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.