miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9067 5' -58.6 NC_002512.2 + 218873 0.66 0.908618
Target:  5'- gGGCaccGACG-CCGUGCGCGccCUCAUCg -3'
miRNA:   3'- gCUGc--CUGCaGGCGCGCGUc-GAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 138952 0.66 0.908618
Target:  5'- aCGACGGcgGCGgCCGCGC-CGGCccCGUUc -3'
miRNA:   3'- -GCUGCC--UGCaGGCGCGcGUCGa-GUAG- -5'
9067 5' -58.6 NC_002512.2 + 83819 0.66 0.908618
Target:  5'- cCGGCGGcgGCGgcUCCGgGCcCGGgUCGUCg -3'
miRNA:   3'- -GCUGCC--UGC--AGGCgCGcGUCgAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 123106 0.66 0.908618
Target:  5'- cCGGCGGAacCGUCC-CGCcgccgucgGCGGC-CGUCc -3'
miRNA:   3'- -GCUGCCU--GCAGGcGCG--------CGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 44186 0.66 0.908618
Target:  5'- gCGGCGGugGUCgCGCaGCGaGGCgCAg- -3'
miRNA:   3'- -GCUGCCugCAG-GCG-CGCgUCGaGUag -5'
9067 5' -58.6 NC_002512.2 + 2098 0.66 0.908618
Target:  5'- -aGCGGGCGguaCgGC-CGCGGCUCgGUCg -3'
miRNA:   3'- gcUGCCUGCa--GgCGcGCGUCGAG-UAG- -5'
9067 5' -58.6 NC_002512.2 + 59258 0.66 0.906872
Target:  5'- cCGGCGGAagcgaugucgcccaCGUCCGUGaCGUcguGCUCGa- -3'
miRNA:   3'- -GCUGCCU--------------GCAGGCGC-GCGu--CGAGUag -5'
9067 5' -58.6 NC_002512.2 + 190957 0.66 0.905107
Target:  5'- -cGCGGGCGcCCGC-CGCGGCggccccuccggcgcCGUCg -3'
miRNA:   3'- gcUGCCUGCaGGCGcGCGUCGa-------------GUAG- -5'
9067 5' -58.6 NC_002512.2 + 13362 0.66 0.902724
Target:  5'- aCGAcuCGGgcGCGUUCGUGgugcCGCGGUUCGUCc -3'
miRNA:   3'- -GCU--GCC--UGCAGGCGC----GCGUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 144105 0.66 0.896619
Target:  5'- uGACGGACGaccUCCGaGuCGCGGUcUAUCu -3'
miRNA:   3'- gCUGCCUGC---AGGCgC-GCGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 218493 0.66 0.896619
Target:  5'- -cGCGGGuCGUCCGCGUcCgAGC-CGUCg -3'
miRNA:   3'- gcUGCCU-GCAGGCGCGcG-UCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 165277 0.66 0.896619
Target:  5'- --cCGGaccccuuucaGCGUcuccaucucgCCGCGCGCcGCUCGUCg -3'
miRNA:   3'- gcuGCC----------UGCA----------GGCGCGCGuCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 225063 0.66 0.896619
Target:  5'- uCGGCGGcgcgcaacACGUCC-CGCaGCAGCUgccgcagcaacCGUCg -3'
miRNA:   3'- -GCUGCC--------UGCAGGcGCG-CGUCGA-----------GUAG- -5'
9067 5' -58.6 NC_002512.2 + 192587 0.66 0.896619
Target:  5'- -aGCGGAcCGUCCcgcugcugcggcGCGCGCGGCgggCGa- -3'
miRNA:   3'- gcUGCCU-GCAGG------------CGCGCGUCGa--GUag -5'
9067 5' -58.6 NC_002512.2 + 8720 0.66 0.896619
Target:  5'- aGGuCGGuCGgCCGCGCGCGcccGCcCGUCg -3'
miRNA:   3'- gCU-GCCuGCaGGCGCGCGU---CGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 139023 0.66 0.896619
Target:  5'- cCGACGG-CGg-CGCG-GaCGGCUCGUCc -3'
miRNA:   3'- -GCUGCCuGCagGCGCgC-GUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 226529 0.66 0.896619
Target:  5'- gGGCGGACgGUCUGaGCGgGGgUCAUa -3'
miRNA:   3'- gCUGCCUG-CAGGCgCGCgUCgAGUAg -5'
9067 5' -58.6 NC_002512.2 + 222474 0.66 0.895997
Target:  5'- aCGAUGGAC-UCCGUGUugccauuGCAGUcgacgcgaUCGUCg -3'
miRNA:   3'- -GCUGCCUGcAGGCGCG-------CGUCG--------AGUAG- -5'
9067 5' -58.6 NC_002512.2 + 130632 0.66 0.895997
Target:  5'- cCGGCguccucgGGGCGUCCcucgacuucuGCGCGgGGCUC-UCc -3'
miRNA:   3'- -GCUG-------CCUGCAGG----------CGCGCgUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 132703 0.66 0.892856
Target:  5'- aGACGGGCGucgugggcgagauccUCgGCccgugccgcagGCGCAGCgcggCGUCg -3'
miRNA:   3'- gCUGCCUGC---------------AGgCG-----------CGCGUCGa---GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.