miRNA display CGI


Results 1 - 20 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 95296 0.66 0.996627
Target:  5'- --cCCGUcggcggacgagGCGCCGAa--GCAGCGGCGg -3'
miRNA:   3'- cuuGGCG-----------UGCGGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 209512 0.66 0.996627
Target:  5'- gGGACCGC-UGUUacGUCUACAGCGAgGa -3'
miRNA:   3'- -CUUGGCGuGCGGc-UAGAUGUUGCUgC- -5'
9069 3' -52.4 NC_002512.2 + 5163 0.66 0.996627
Target:  5'- cAGCgGCGCGaCCGGg--GCGGCGGCc -3'
miRNA:   3'- cUUGgCGUGC-GGCUagaUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 196812 0.66 0.996627
Target:  5'- uGACCGCgcGCGCCGGUCUuuugAgAGCGuuCa -3'
miRNA:   3'- cUUGGCG--UGCGGCUAGA----UgUUGCu-Gc -5'
9069 3' -52.4 NC_002512.2 + 135695 0.66 0.996627
Target:  5'- cGACCGCAuCGacuaCGAgaaCUACGuGCGGCGg -3'
miRNA:   3'- cUUGGCGU-GCg---GCUa--GAUGU-UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 44403 0.66 0.996627
Target:  5'- ---gCGUGCGCCauGAcCUGCGGCGGCa -3'
miRNA:   3'- cuugGCGUGCGG--CUaGAUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 90025 0.66 0.996627
Target:  5'- --cCCGCAcuCGUCGAUg-ACGAUGACGu -3'
miRNA:   3'- cuuGGCGU--GCGGCUAgaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 114006 0.66 0.996627
Target:  5'- --cCCGC-CGCCG-UCggccccGCAGCGGCa -3'
miRNA:   3'- cuuGGCGuGCGGCuAGa-----UGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 146268 0.66 0.996627
Target:  5'- uGGGCCGCcugaACGCCGuGUCcaacccCGGCGACu -3'
miRNA:   3'- -CUUGGCG----UGCGGC-UAGau----GUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 213495 0.66 0.996627
Target:  5'- -cACUGCGCGCCcGUCgacuuCGAgGGCGu -3'
miRNA:   3'- cuUGGCGUGCGGcUAGau---GUUgCUGC- -5'
9069 3' -52.4 NC_002512.2 + 192390 0.66 0.996627
Target:  5'- cGAuCCGCAauCCGAUgCggACAACGACu -3'
miRNA:   3'- -CUuGGCGUgcGGCUA-Ga-UGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 36650 0.66 0.996123
Target:  5'- aGAACCGC-CGUCGGcaguugacccccaggCUgccggGCAACGGCGa -3'
miRNA:   3'- -CUUGGCGuGCGGCUa--------------GA-----UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 3438 0.66 0.996063
Target:  5'- --cUCGCgGgGCUGGUCggugACGGCGACGa -3'
miRNA:   3'- cuuGGCG-UgCGGCUAGa---UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 88283 0.66 0.996063
Target:  5'- cGACCGCca--CGGUCUGCAGCGuCa -3'
miRNA:   3'- cUUGGCGugcgGCUAGAUGUUGCuGc -5'
9069 3' -52.4 NC_002512.2 + 119403 0.66 0.996063
Target:  5'- aGGGCCGCGUGCCG--CUGCucgggAGCGugGa -3'
miRNA:   3'- -CUUGGCGUGCGGCuaGAUG-----UUGCugC- -5'
9069 3' -52.4 NC_002512.2 + 118714 0.66 0.996063
Target:  5'- --cCCGCcUGCCGcUCgcCGGCGACGu -3'
miRNA:   3'- cuuGGCGuGCGGCuAGauGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 52917 0.66 0.996063
Target:  5'- aAGgCGUACGUCGGaCUGCGggACGACa -3'
miRNA:   3'- cUUgGCGUGCGGCUaGAUGU--UGCUGc -5'
9069 3' -52.4 NC_002512.2 + 42705 0.66 0.996063
Target:  5'- -cGCCgGCACGCCGAa----GAUGGCGg -3'
miRNA:   3'- cuUGG-CGUGCGGCUagaugUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 128123 0.66 0.996063
Target:  5'- -cGCCGUcuCGCCGAaggUCagGCGGCGGCu -3'
miRNA:   3'- cuUGGCGu-GCGGCU---AGa-UGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 16958 0.66 0.996063
Target:  5'- cGGACCGgGCGcCCGAUCgaaGAUGcCGu -3'
miRNA:   3'- -CUUGGCgUGC-GGCUAGaugUUGCuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.