miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 141190 0.66 0.985884
Target:  5'- cCCUCCGc-GCGAACGUCccGCGUCCg -3'
miRNA:   3'- cGGAGGUacUGCUUGUAGc-UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 110000 0.66 0.985884
Target:  5'- uGCaggCCGUGugGGGCGUC-ACGCgCa -3'
miRNA:   3'- -CGga-GGUACugCUUGUAGcUGCGgGa -5'
9069 5' -54.3 NC_002512.2 + 17018 0.66 0.985884
Target:  5'- cGUCUCCGgaggagggGACGcucggagggGACGgaCGGCGCCCg -3'
miRNA:   3'- -CGGAGGUa-------CUGC---------UUGUa-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 211246 0.66 0.985884
Target:  5'- uGCgUCgA-GGCGGcCGUCGACGCCa- -3'
miRNA:   3'- -CGgAGgUaCUGCUuGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 70842 0.66 0.984876
Target:  5'- cGCC-CCggGACGAGaugccgcggagaaguCGUCGGucCGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGCUU---------------GUAGCU--GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 130262 0.66 0.984876
Target:  5'- cCCUCCGagggcgacgaccgcGACGAGCG-CGGgGCCCg -3'
miRNA:   3'- cGGAGGUa-------------CUGCUUGUaGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 9313 0.66 0.984876
Target:  5'- gGCaCUCCAUcgGGCGGcgcacggccagguagACGgcggUGACGCCCUc -3'
miRNA:   3'- -CG-GAGGUA--CUGCU---------------UGUa---GCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 137921 0.66 0.984173
Target:  5'- cCCUCCG-GACGuGCcgCucCGCCCUg -3'
miRNA:   3'- cGGAGGUaCUGCuUGuaGcuGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 222341 0.66 0.984173
Target:  5'- cGCCUCCAggaggagGAgGAGCGgcaCGGgGCCg- -3'
miRNA:   3'- -CGGAGGUa------CUgCUUGUa--GCUgCGGga -5'
9069 5' -54.3 NC_002512.2 + 154804 0.66 0.984173
Target:  5'- aGCCcCCGaaacGGCGccucGACGUCGcCGCCCg -3'
miRNA:   3'- -CGGaGGUa---CUGC----UUGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 75233 0.66 0.984173
Target:  5'- cGCCgucgCgGUGACGAGCG-CGgccGCGUCCc -3'
miRNA:   3'- -CGGa---GgUACUGCUUGUaGC---UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 94419 0.66 0.984173
Target:  5'- gGCgCUCCAgu-CGGccGCGUCGAaCGCCUg -3'
miRNA:   3'- -CG-GAGGUacuGCU--UGUAGCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 92691 0.66 0.984173
Target:  5'- cGCCgcCCAccgGGCGGACcgaCGACGCCg- -3'
miRNA:   3'- -CGGa-GGUa--CUGCUUGua-GCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 83014 0.66 0.984173
Target:  5'- gGCCUCCG-GGCGGua---GugGCCCc -3'
miRNA:   3'- -CGGAGGUaCUGCUuguagCugCGGGa -5'
9069 5' -54.3 NC_002512.2 + 6628 0.66 0.984173
Target:  5'- cGCC-CCccGACGAcGCG--GACGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGCU-UGUagCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 99221 0.66 0.982309
Target:  5'- cGCCgCCGUGugGGucgugcGCAUCuGGUGCCCc -3'
miRNA:   3'- -CGGaGGUACugCU------UGUAG-CUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 196984 0.66 0.982309
Target:  5'- cGUgUCCGacaaccUGGCGGGCGUCGACaaCCa -3'
miRNA:   3'- -CGgAGGU------ACUGCUUGUAGCUGcgGGa -5'
9069 5' -54.3 NC_002512.2 + 106729 0.66 0.982309
Target:  5'- gGCCUCgGcGGCGAuCG-CGGCGCCg- -3'
miRNA:   3'- -CGGAGgUaCUGCUuGUaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 199260 0.66 0.982309
Target:  5'- aGUCUCUggAUGucgggcggccCGAACAUCcGCGCCCUc -3'
miRNA:   3'- -CGGAGG--UACu---------GCUUGUAGcUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 85516 0.66 0.982309
Target:  5'- -aCUCgGUGGCGAACAggaCGGCGgUCa -3'
miRNA:   3'- cgGAGgUACUGCUUGUa--GCUGCgGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.