miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 107787 0.66 0.941861
Target:  5'- gACGUCaGCGCCGAccucgcGUcCGGCGCGu- -3'
miRNA:   3'- aUGUAGgCGCGGCU------CAuGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 226192 0.66 0.941861
Target:  5'- gACggCCGCGCCGuuaGCG-CGCGGc -3'
miRNA:   3'- aUGuaGGCGCGGCucaUGCuGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 104870 0.66 0.941861
Target:  5'- cGCAgcgggCgGCGCCGA---CGGCGCGAc -3'
miRNA:   3'- aUGUa----GgCGCGGCUcauGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 228052 0.66 0.941861
Target:  5'- gACGcCCGCGgaCGGcUGCGGCGCGGGa -3'
miRNA:   3'- aUGUaGGCGCg-GCUcAUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 155384 0.66 0.941861
Target:  5'- gGCggCgGCGCCGGcggGCGAuCGCGGAg -3'
miRNA:   3'- aUGuaGgCGCGGCUca-UGCU-GCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 199982 0.66 0.941861
Target:  5'- cGCGUCCGCGCgcccggCGGGgACGA-GCGGc -3'
miRNA:   3'- aUGUAGGCGCG------GCUCaUGCUgCGCUu -5'
9073 3' -56.6 NC_002512.2 + 90919 0.66 0.941861
Target:  5'- gGCggCCGCGaaCGGGgcCGGCGCGGc -3'
miRNA:   3'- aUGuaGGCGCg-GCUCauGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 82700 0.66 0.941861
Target:  5'- gGCGUCCGUGC-----GCGGCGCGGg -3'
miRNA:   3'- aUGUAGGCGCGgcucaUGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 90490 0.66 0.941861
Target:  5'- gGCGUCCucgacgggaucgGgGCCGAGgcCGGCgGCGGAc -3'
miRNA:   3'- aUGUAGG------------CgCGGCUCauGCUG-CGCUU- -5'
9073 3' -56.6 NC_002512.2 + 113689 0.66 0.94141
Target:  5'- gACGUUgGCGCCGAagagcaucuuguaGUGgguccCGACGCGGg -3'
miRNA:   3'- aUGUAGgCGCGGCU-------------CAU-----GCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 9820 0.66 0.937248
Target:  5'- aGgAUCCGCGCCaGAGUcuCGG-GCGGAg -3'
miRNA:   3'- aUgUAGGCGCGG-CUCAu-GCUgCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 140358 0.66 0.937248
Target:  5'- gUACAUCCGCGCCGAcaacCGGCa---- -3'
miRNA:   3'- -AUGUAGGCGCGGCUcau-GCUGcgcuu -5'
9073 3' -56.6 NC_002512.2 + 138287 0.66 0.937248
Target:  5'- gUGCGUCCGCaGCuCGuGGUGCcGCGCGc- -3'
miRNA:   3'- -AUGUAGGCG-CG-GC-UCAUGcUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 30652 0.66 0.937248
Target:  5'- gACAUCgggcUGCGCCGGaucuaccggGCGGCGCGGu -3'
miRNA:   3'- aUGUAG----GCGCGGCUca-------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 219116 0.66 0.937248
Target:  5'- cUACGccuaCCGCGgCGGGgccgACGACGCGc- -3'
miRNA:   3'- -AUGUa---GGCGCgGCUCa---UGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 149837 0.66 0.932408
Target:  5'- aGCGacCCGCGCgaCGAGgACGACGaCGAAa -3'
miRNA:   3'- aUGUa-GGCGCG--GCUCaUGCUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 169575 0.66 0.932408
Target:  5'- gGCGucUCCGCGuCCGccaGGUACGACGacaGGu -3'
miRNA:   3'- aUGU--AGGCGC-GGC---UCAUGCUGCg--CUu -5'
9073 3' -56.6 NC_002512.2 + 141903 0.66 0.932408
Target:  5'- ---cUCCGCGUCGGG-GCGcCGCGGc -3'
miRNA:   3'- auguAGGCGCGGCUCaUGCuGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 47543 0.66 0.932408
Target:  5'- aGCAgCCggGCGCgGAGUAC-ACGCGGGa -3'
miRNA:   3'- aUGUaGG--CGCGgCUCAUGcUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 118302 0.66 0.932408
Target:  5'- aAgAUCCGgGCCGAGcgcgcggACGACGaGAGg -3'
miRNA:   3'- aUgUAGGCgCGGCUCa------UGCUGCgCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.