miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 64291 0.65 0.9935
Target:  5'- cGGUAGGgAGGCcaguuggggaGCGGCuGCCcggCCa -3'
miRNA:   3'- -CCAUCUgUCUGaag-------UGCCGuCGGa--GG- -5'
9085 5' -53.2 NC_002512.2 + 50548 0.66 0.993133
Target:  5'- aGGUAGAgCAGuuucgCGCGGCGcugcaggaucugcccGCCUCg -3'
miRNA:   3'- -CCAUCU-GUCugaa-GUGCCGU---------------CGGAGg -5'
9085 5' -53.2 NC_002512.2 + 138674 0.66 0.992749
Target:  5'- cGGUGGACucGCUgaaCGugccccgggUGGCGGUCUCCc -3'
miRNA:   3'- -CCAUCUGucUGAa--GU---------GCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 5828 0.66 0.992749
Target:  5'- aGGUcgcAGACGcccGACgagUCGucccCGGCGGCC-CCg -3'
miRNA:   3'- -CCA---UCUGU---CUGa--AGU----GCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 133598 0.66 0.992749
Target:  5'- cGgcGGCGGcc--CGCGGCAGCCcCCc -3'
miRNA:   3'- cCauCUGUCugaaGUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 154342 0.66 0.992749
Target:  5'- cGGcgAGcccGCGGAUUUUuuugggacaagAUGGCGGCUUCCg -3'
miRNA:   3'- -CCa-UC---UGUCUGAAG-----------UGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 177414 0.66 0.992749
Target:  5'- aGGUGGACGuGACUUUgAgGGgGGUCUUUa -3'
miRNA:   3'- -CCAUCUGU-CUGAAG-UgCCgUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 36881 0.66 0.992749
Target:  5'- aGGUGGGCAGG----GCGGC-GCCcgcggUCCa -3'
miRNA:   3'- -CCAUCUGUCUgaagUGCCGuCGG-----AGG- -5'
9085 5' -53.2 NC_002512.2 + 26663 0.66 0.992749
Target:  5'- aGGUcggGGGCGGGCUcgaaGCGGCAGaCguacgCCg -3'
miRNA:   3'- -CCA---UCUGUCUGAag--UGCCGUCgGa----GG- -5'
9085 5' -53.2 NC_002512.2 + 63221 0.66 0.991715
Target:  5'- uGGUGGuacccgcacuCGGGCgccaaCACGGUGGCCcCCu -3'
miRNA:   3'- -CCAUCu---------GUCUGaa---GUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 153268 0.66 0.991715
Target:  5'- ---cGACGGAUgcgAUGGCGGCC-CCg -3'
miRNA:   3'- ccauCUGUCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 127491 0.66 0.991715
Target:  5'- cGgcGACGucGGCUggaaccuCGGCGGCCUUCa -3'
miRNA:   3'- cCauCUGU--CUGAagu----GCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 201020 0.66 0.991715
Target:  5'- cGUuu-CAGGUUUCACGGCAucGCCaUCCa -3'
miRNA:   3'- cCAucuGUCUGAAGUGCCGU--CGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 191467 0.66 0.99104
Target:  5'- aGGUGGGCcgaguacgaggcgccGGACagCGCGGCGaccggcGCgCUCCc -3'
miRNA:   3'- -CCAUCUG---------------UCUGaaGUGCCGU------CG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 189065 0.66 0.990567
Target:  5'- cGGccGGCGGcGCUcUCgACGGCgAGUCUCCg -3'
miRNA:   3'- -CCauCUGUC-UGA-AG-UGCCG-UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 196897 0.66 0.990567
Target:  5'- ---cGACGG-CgUCAUGGcCAGCCUCa -3'
miRNA:   3'- ccauCUGUCuGaAGUGCC-GUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 188933 0.66 0.990567
Target:  5'- cGGUGG-CGGGg--CGCGGCGGUCgguUCCc -3'
miRNA:   3'- -CCAUCuGUCUgaaGUGCCGUCGG---AGG- -5'
9085 5' -53.2 NC_002512.2 + 101775 0.66 0.990567
Target:  5'- cGGcgAGACGGcGCcguccUCGCGGCGgagcGCUUCCg -3'
miRNA:   3'- -CCa-UCUGUC-UGa----AGUGCCGU----CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 53886 0.66 0.990567
Target:  5'- aGGgaccGACGGACgaggagaUCuCGGUcGCCUCCc -3'
miRNA:   3'- -CCau--CUGUCUGa------AGuGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 84082 0.66 0.990567
Target:  5'- uGGUcc-CAGaACUUC-UGGCGgGCCUCCa -3'
miRNA:   3'- -CCAucuGUC-UGAAGuGCCGU-CGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.