miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 5' -64.3 NC_002512.2 + 101937 0.65 0.703669
Target:  5'- aGGCGGCGGGcaaguccaaGCUGgUGGcccgcgggcccgcCGGCGGGc -3'
miRNA:   3'- -CCGCCGCCC---------CGGCaACCu------------GCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 204697 0.66 0.698176
Target:  5'- cGCGGCGGacgcgacgucGGCgaCGgcGGGCccggGGCGGGGg -3'
miRNA:   3'- cCGCCGCC----------CCG--GCaaCCUG----CCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 111074 0.66 0.698176
Target:  5'- cGCGGUcgccgaccacgacgGGGGCCcacagcucccgcccGGCGGCGGAGg -3'
miRNA:   3'- cCGCCG--------------CCCCGGcaac----------CUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 80416 0.66 0.698176
Target:  5'- uGGUGGCGuGGCUGUcGG-CGGCGu-- -3'
miRNA:   3'- -CCGCCGCcCCGGCAaCCuGCCGCcuc -5'
9095 5' -64.3 NC_002512.2 + 228021 0.66 0.698176
Target:  5'- cGCGGgacgaGGGGCgaccGGACGGCGGcGa -3'
miRNA:   3'- cCGCCg----CCCCGgcaaCCUGCCGCCuC- -5'
9095 5' -64.3 NC_002512.2 + 45459 0.66 0.698176
Target:  5'- cGcCGGCGGcGGCCGa--GGCGaCGGAGa -3'
miRNA:   3'- cC-GCCGCC-CCGGCaacCUGCcGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 205722 0.66 0.697259
Target:  5'- cGGCGGCacaagucGGGGUCGggGGGuagguagGGcCGGGGu -3'
miRNA:   3'- -CCGCCG-------CCCCGGCaaCCUg------CC-GCCUC- -5'
9095 5' -64.3 NC_002512.2 + 80831 0.66 0.696341
Target:  5'- cGGCGGaGGGGCCccGUaggcgagccucgGGACG-CGGGGc -3'
miRNA:   3'- -CCGCCgCCCCGG--CAa-----------CCUGCcGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 152687 0.66 0.692666
Target:  5'- cGGCGGcCGGucucgucgcguccccGGUCGggGuGCGGCGGGc -3'
miRNA:   3'- -CCGCC-GCC---------------CCGGCaaCcUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 185557 0.66 0.688985
Target:  5'- cGCGGCGuGGCCGUcgaggggaccUGGaACGGCa--- -3'
miRNA:   3'- cCGCCGCcCCGGCA----------ACC-UGCCGccuc -5'
9095 5' -64.3 NC_002512.2 + 188781 0.66 0.688985
Target:  5'- cGGCGGCGGcuccGGCCucGgcGGccccgaucGCGGCGGc- -3'
miRNA:   3'- -CCGCCGCC----CCGG--CaaCC--------UGCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 87854 0.66 0.688985
Target:  5'- cGCGGCGGGucGCCGgcccccGGCcGCGGAa -3'
miRNA:   3'- cCGCCGCCC--CGGCaac---CUGcCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 118215 0.66 0.688985
Target:  5'- uGGUGcGaCGGGGCCcucGUgcucggGGACGGCaccguccuGGAGc -3'
miRNA:   3'- -CCGC-C-GCCCCGG---CAa-----CCUGCCG--------CCUC- -5'
9095 5' -64.3 NC_002512.2 + 221168 0.66 0.682526
Target:  5'- gGGCGcGCGcGGCCGaccgaccucggagUGGACGGgacccgaguacguaCGGAGa -3'
miRNA:   3'- -CCGC-CGCcCCGGCa------------ACCUGCC--------------GCCUC- -5'
9095 5' -64.3 NC_002512.2 + 103336 0.66 0.679754
Target:  5'- gGGCGGCGuaGCCcg-GGGCGGaCGGc- -3'
miRNA:   3'- -CCGCCGCccCGGcaaCCUGCC-GCCuc -5'
9095 5' -64.3 NC_002512.2 + 63444 0.66 0.679754
Target:  5'- cGGCGcCGucGCCcccGgaGGACGGCGGGGa -3'
miRNA:   3'- -CCGCcGCccCGG---CaaCCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 204987 0.66 0.679754
Target:  5'- gGGCGaCGGGGaCC---GGAaGGCGGGGg -3'
miRNA:   3'- -CCGCcGCCCC-GGcaaCCUgCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 150325 0.66 0.679754
Target:  5'- cGGCGGCGaGGacGCCGc--GGCGGUgauGGAGu -3'
miRNA:   3'- -CCGCCGC-CC--CGGCaacCUGCCG---CCUC- -5'
9095 5' -64.3 NC_002512.2 + 150042 0.66 0.679754
Target:  5'- aGGgGGcCGGGGaCGacgGGGCGGgaGGGGg -3'
miRNA:   3'- -CCgCC-GCCCCgGCaa-CCUGCCg-CCUC- -5'
9095 5' -64.3 NC_002512.2 + 204636 0.66 0.679754
Target:  5'- aGgGGaCGGGGaCCGggacgGcGACGcGCGGGGg -3'
miRNA:   3'- cCgCC-GCCCC-GGCaa---C-CUGC-CGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.