miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 274 0.66 0.874676
Target:  5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3'
miRNA:   3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5'
9101 5' -60 NC_002512.2 + 150302 0.66 0.874676
Target:  5'- gCGAAgaGGcGGAGgaGCGAgacCGGCGGCg- -3'
miRNA:   3'- -GCUU--UC-CCUCggCGCUa--GCCGCCGgg -5'
9101 5' -60 NC_002512.2 + 119548 0.66 0.874676
Target:  5'- aGgcGGGGAGCgGgGAcCgGGCGGaCCg -3'
miRNA:   3'- gCuuUCCCUCGgCgCUaG-CCGCCgGG- -5'
9101 5' -60 NC_002512.2 + 116598 0.66 0.874676
Target:  5'- gCGAGGgcGGGAGgcCCGCcg-CGGCuGCCCc -3'
miRNA:   3'- -GCUUU--CCCUC--GGCGcuaGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 217907 0.66 0.874676
Target:  5'- ------cGAGCgGCGGUacgagaCGGUGGCCCg -3'
miRNA:   3'- gcuuuccCUCGgCGCUA------GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 95196 0.66 0.874676
Target:  5'- gCGAGAGGacGuCCGCGGUCG-CGcGUCCg -3'
miRNA:   3'- -GCUUUCCcuC-GGCGCUAGCcGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 229677 0.66 0.874676
Target:  5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3'
miRNA:   3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5'
9101 5' -60 NC_002512.2 + 82115 0.66 0.874676
Target:  5'- ------cGAGCCGCGAgUCGGgaCGGCCg -3'
miRNA:   3'- gcuuuccCUCGGCGCU-AGCC--GCCGGg -5'
9101 5' -60 NC_002512.2 + 210845 0.66 0.873996
Target:  5'- cCGucuGGGGGCUGCuccgcgaGAUCGaguGCGuGCCCu -3'
miRNA:   3'- -GCuuuCCCUCGGCG-------CUAGC---CGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 99072 0.66 0.872631
Target:  5'- gGuuGGGGuggcugaggaugaaGGCgGCGAaggUGGCGaGCCCg -3'
miRNA:   3'- gCuuUCCC--------------UCGgCGCUa--GCCGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 99889 0.66 0.870568
Target:  5'- cCGGGA-GGAGgCGCGGcccgucgagggcgcCGGgGGCCCg -3'
miRNA:   3'- -GCUUUcCCUCgGCGCUa-------------GCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 71633 0.66 0.870568
Target:  5'- uGAAcuccAGGGuguacucggccaccgAGCCGaacuUgGGCGGCCCg -3'
miRNA:   3'- gCUU----UCCC---------------UCGGCgcu-AgCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 137991 0.66 0.870568
Target:  5'- cCGAgcGGGccgugcGCCGCGccgccgcccgcgccgGaCGGCGGCCUc -3'
miRNA:   3'- -GCUuuCCCu-----CGGCGC---------------UaGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 113667 0.66 0.867791
Target:  5'- cCGcGAGGGuGCgCGCgGGUCGGacguuGGCgCCg -3'
miRNA:   3'- -GCuUUCCCuCG-GCG-CUAGCCg----CCG-GG- -5'
9101 5' -60 NC_002512.2 + 47813 0.66 0.867791
Target:  5'- aGAccccGGAGCCGCGGcugaggUCGGCgcggcuGGCCg -3'
miRNA:   3'- gCUuuc-CCUCGGCGCU------AGCCG------CCGGg -5'
9101 5' -60 NC_002512.2 + 10708 0.66 0.867791
Target:  5'- aGGAAGcGGuAGCCGaCGG-CGGCGaaGUCCu -3'
miRNA:   3'- gCUUUC-CC-UCGGC-GCUaGCCGC--CGGG- -5'
9101 5' -60 NC_002512.2 + 93373 0.66 0.867791
Target:  5'- cCGGGAGGGgaucgGGCCGCag--GGCGcGCCg -3'
miRNA:   3'- -GCUUUCCC-----UCGGCGcuagCCGC-CGGg -5'
9101 5' -60 NC_002512.2 + 157072 0.66 0.867791
Target:  5'- cCGGGguccGGGGucGCCgGCGcccaCGGCGGgCCCg -3'
miRNA:   3'- -GCUU----UCCCu-CGG-CGCua--GCCGCC-GGG- -5'
9101 5' -60 NC_002512.2 + 30412 0.66 0.867791
Target:  5'- aCGGAcGGGGAcGCgGgCG-UCGucGCGGCCCu -3'
miRNA:   3'- -GCUU-UCCCU-CGgC-GCuAGC--CGCCGGG- -5'
9101 5' -60 NC_002512.2 + 134233 0.66 0.867791
Target:  5'- aCGAGAGGcuguGCCGgGggCGGCcgagccGCCCc -3'
miRNA:   3'- -GCUUUCCcu--CGGCgCuaGCCGc-----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.