miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 109103 0.66 0.899999
Target:  5'- -gUGGCCGU-CAGCGCCAgGCUgaggGUCu -3'
miRNA:   3'- cuGCCGGUAgGUCGUGGUgCGG----UAGu -5'
9107 3' -58.1 NC_002512.2 + 145614 0.66 0.899999
Target:  5'- aGGCGGgCGUUCGGC-CCGCuGCCcgCc -3'
miRNA:   3'- -CUGCCgGUAGGUCGuGGUG-CGGuaGu -5'
9107 3' -58.1 NC_002512.2 + 160981 0.66 0.899999
Target:  5'- cGGCGGCCAg-CAGCACgAcCGCCc--- -3'
miRNA:   3'- -CUGCCGGUagGUCGUGgU-GCGGuagu -5'
9107 3' -58.1 NC_002512.2 + 160141 0.66 0.899999
Target:  5'- -gUGGCgAUCCgGGCGCCGCG-UGUCAa -3'
miRNA:   3'- cuGCCGgUAGG-UCGUGGUGCgGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 84851 0.66 0.899999
Target:  5'- -cCGGCCGUCCcgggcGUugCGCGCCc--- -3'
miRNA:   3'- cuGCCGGUAGGu----CGugGUGCGGuagu -5'
9107 3' -58.1 NC_002512.2 + 131755 0.66 0.899999
Target:  5'- gGGCGGCCGcgacgaCCAGCGCCcCGgCAa-- -3'
miRNA:   3'- -CUGCCGGUa-----GGUCGUGGuGCgGUagu -5'
9107 3' -58.1 NC_002512.2 + 126380 0.66 0.899999
Target:  5'- -cUGGCCGcCCgggagAGCGCCcggggccccggGCGCCGUCGa -3'
miRNA:   3'- cuGCCGGUaGG-----UCGUGG-----------UGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 132520 0.66 0.899377
Target:  5'- -cCGGCCGccgcgguccccgcUCCGcGgGCgGCGCCGUCGg -3'
miRNA:   3'- cuGCCGGU-------------AGGU-CgUGgUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 126457 0.66 0.893684
Target:  5'- cGGCGGCCG-CCuuguuCGCCGuCGUCGUCGc -3'
miRNA:   3'- -CUGCCGGUaGGuc---GUGGU-GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 185005 0.66 0.893684
Target:  5'- uGCGGCCcggugCCGcuGUACaGCGCCGUCGu -3'
miRNA:   3'- cUGCCGGua---GGU--CGUGgUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 112049 0.66 0.893684
Target:  5'- aGAUGGCCuccguGUCCAGgacgucggucCGCCGCGagcCCGUCGc -3'
miRNA:   3'- -CUGCCGG-----UAGGUC----------GUGGUGC---GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 221709 0.66 0.893684
Target:  5'- -uCGGCC-UCgGGUGCUACGCCGa-- -3'
miRNA:   3'- cuGCCGGuAGgUCGUGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 135819 0.66 0.893684
Target:  5'- cGACGGUCccguUCCcgccGCGCC-CGUCGUCGc -3'
miRNA:   3'- -CUGCCGGu---AGGu---CGUGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 5180 0.66 0.893684
Target:  5'- cGGCGGCCGgccCCAGCagggcgggcaggACCGCggGCCAg-- -3'
miRNA:   3'- -CUGCCGGUa--GGUCG------------UGGUG--CGGUagu -5'
9107 3' -58.1 NC_002512.2 + 3145 0.66 0.893684
Target:  5'- -cCGGCCGgagcCCGGU-CC-CGCCGUCGu -3'
miRNA:   3'- cuGCCGGUa---GGUCGuGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 118661 0.66 0.893684
Target:  5'- uGACGGCCGgggacgUCAGCAaaCugGCCAa-- -3'
miRNA:   3'- -CUGCCGGUa-----GGUCGUg-GugCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 77574 0.66 0.893684
Target:  5'- cACGGgCGUCCga-GCCACGCCGa-- -3'
miRNA:   3'- cUGCCgGUAGGucgUGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 80489 0.66 0.889791
Target:  5'- cGCGGCCcgucgaggagccggaGUCCuGCGuccCCGCGCCcUCGu -3'
miRNA:   3'- cUGCCGG---------------UAGGuCGU---GGUGCGGuAGU- -5'
9107 3' -58.1 NC_002512.2 + 73993 0.66 0.887154
Target:  5'- -cCGGaCuCGUCCccGCGCC-CGCCGUCGg -3'
miRNA:   3'- cuGCC-G-GUAGGu-CGUGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 134345 0.66 0.887154
Target:  5'- cGCGGCCGagcUCCAGaC-CCGCaCCGUCc -3'
miRNA:   3'- cUGCCGGU---AGGUC-GuGGUGcGGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.