miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 95940 0.66 0.896619
Target:  5'- cUUGAUCGCGCccuccggcgggGGGCUgaggcccgGGUUGGCGCAg -3'
miRNA:   3'- cGGCUAGUGCG-----------CUUGG--------CCGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 72590 0.66 0.896619
Target:  5'- aCCGAUCACGCucacGAACUcccgcuuGCUGcGCGCc -3'
miRNA:   3'- cGGCUAGUGCG----CUUGGc------CGAC-CGCGu -5'
9107 5' -58.9 NC_002512.2 + 121396 0.66 0.896619
Target:  5'- gGCCGG--ACG-GAGCCGcGcCUGGCGUg -3'
miRNA:   3'- -CGGCUagUGCgCUUGGC-C-GACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 3320 0.66 0.896619
Target:  5'- gGCCGGggaGCGCGAGCCGGaguccGaCGCc -3'
miRNA:   3'- -CGGCUag-UGCGCUUGGCCgac--C-GCGu -5'
9107 5' -58.9 NC_002512.2 + 63925 0.66 0.896619
Target:  5'- cGCCGcagcUugGUGAAgCGGCcGGCGUc -3'
miRNA:   3'- -CGGCua--GugCGCUUgGCCGaCCGCGu -5'
9107 5' -58.9 NC_002512.2 + 105192 0.66 0.895997
Target:  5'- uCCGAUCGCaGCaGGCCGuguagagguccgaGCUGaGCGCGa -3'
miRNA:   3'- cGGCUAGUG-CGcUUGGC-------------CGAC-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 221916 0.66 0.890305
Target:  5'- cGCCag-CGCGCGA--UGGcCUGGUGCGg -3'
miRNA:   3'- -CGGcuaGUGCGCUugGCC-GACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 198531 0.66 0.890305
Target:  5'- uUCGAUCuccagcuCGUGGucguaGCCGGCcagGGCGCu -3'
miRNA:   3'- cGGCUAGu------GCGCU-----UGGCCGa--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 202093 0.66 0.890305
Target:  5'- cGCCGGUCAccucguccgacCGCGuccucgucAGCUGG-UGGCGCc -3'
miRNA:   3'- -CGGCUAGU-----------GCGC--------UUGGCCgACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 100116 0.66 0.890305
Target:  5'- gGCCGAcguccagguccUCuAgGCGGACCaggaGGCacgUGGCGCGg -3'
miRNA:   3'- -CGGCU-----------AG-UgCGCUUGG----CCG---ACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 37465 0.66 0.890305
Target:  5'- cGCCGA---CGCGAgaaACUGGaaGGUGCAa -3'
miRNA:   3'- -CGGCUaguGCGCU---UGGCCgaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 81130 0.66 0.890305
Target:  5'- cGUCGAagUCGCGCacgaagaagGGAcCCGGCUcguggGGCGCu -3'
miRNA:   3'- -CGGCU--AGUGCG---------CUU-GGCCGA-----CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 217562 0.66 0.890305
Target:  5'- uGUCGcguUCGCgacgGCGAGCCGGUccggcGGCGCc -3'
miRNA:   3'- -CGGCu--AGUG----CGCUUGGCCGa----CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 130229 0.66 0.890305
Target:  5'- cCCGAgcugC-CGgGGAUCGGCUcgGGCGCc -3'
miRNA:   3'- cGGCUa---GuGCgCUUGGCCGA--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 99017 0.66 0.890305
Target:  5'- cCCGAUaggGCGCG--UCGGCgagGGCGCc -3'
miRNA:   3'- cGGCUAg--UGCGCuuGGCCGa--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 106630 0.66 0.890305
Target:  5'- cGCCGGgggguaGCGGcGCCGGCUcGGCGa- -3'
miRNA:   3'- -CGGCUagug--CGCU-UGGCCGA-CCGCgu -5'
9107 5' -58.9 NC_002512.2 + 84176 0.66 0.890305
Target:  5'- cCCGGUCcagguucgGCG-GGACCaGGC-GGCGCAg -3'
miRNA:   3'- cGGCUAG--------UGCgCUUGG-CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 109009 0.66 0.890305
Target:  5'- cGCCGGcggcgUCGuccUGCGGACCcGC-GGCGCGu -3'
miRNA:   3'- -CGGCU-----AGU---GCGCUUGGcCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 6384 0.66 0.889663
Target:  5'- cGCCGuggucGUCGCGaCGGGCagggaggCGGCggcGGCGCu -3'
miRNA:   3'- -CGGC-----UAGUGC-GCUUG-------GCCGa--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 54519 0.66 0.883786
Target:  5'- uGCCGAUCGaacCGgGAcauccccacuACCaGgaGGCGCAg -3'
miRNA:   3'- -CGGCUAGU---GCgCU----------UGGcCgaCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.