miRNA display CGI


Results 1 - 20 of 509 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 3' -68 NC_002512.2 + 222128 0.66 0.551308
Target:  5'- uCCGCGGCcgacuaccGCC-CCgGCUC-CGCCCc -3'
miRNA:   3'- -GGCGCCGcc------CGGaGGgCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 37896 0.66 0.551308
Target:  5'- uCCGCaGCuGGGuCCUCUCccagucgguguGCCCcgcUUGCCCu -3'
miRNA:   3'- -GGCGcCG-CCC-GGAGGG-----------CGGG---AGCGGG- -5'
9112 3' -68 NC_002512.2 + 5725 0.66 0.551308
Target:  5'- uCCGCGc---GCC-CCCGCCC-CGCCUc -3'
miRNA:   3'- -GGCGCcgccCGGaGGGCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 106900 0.66 0.551308
Target:  5'- cCUuCGGCGGGauccgccuCUUCCuCGUCCUCGUCg -3'
miRNA:   3'- -GGcGCCGCCC--------GGAGG-GCGGGAGCGGg -5'
9112 3' -68 NC_002512.2 + 184403 0.66 0.551308
Target:  5'- gCCGcCGGgGGGCgCUCggccuucuCCGUcgCCUCGgCCg -3'
miRNA:   3'- -GGC-GCCgCCCG-GAG--------GGCG--GGAGCgGG- -5'
9112 3' -68 NC_002512.2 + 215313 0.66 0.551308
Target:  5'- gCUGCGGCGacuacggcaccGGCUUCCuCGaCCggaucgUGCCCg -3'
miRNA:   3'- -GGCGCCGC-----------CCGGAGG-GCgGGa-----GCGGG- -5'
9112 3' -68 NC_002512.2 + 172770 0.66 0.551308
Target:  5'- aCUGuCGGCGcaCCcCCCGCuuCCUCGUCCc -3'
miRNA:   3'- -GGC-GCCGCccGGaGGGCG--GGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 131307 0.66 0.551308
Target:  5'- gCGCGGaCGacCCg-CCGCCCgaggCGCCCg -3'
miRNA:   3'- gGCGCC-GCccGGagGGCGGGa---GCGGG- -5'
9112 3' -68 NC_002512.2 + 178969 0.66 0.551308
Target:  5'- gCCGCGGCGGcCCggaagUCCGaCUCggaCGUCCc -3'
miRNA:   3'- -GGCGCCGCCcGGa----GGGC-GGGa--GCGGG- -5'
9112 3' -68 NC_002512.2 + 213674 0.66 0.551308
Target:  5'- -gGCGGagGGGag-CCCGgCgUCGCCCg -3'
miRNA:   3'- ggCGCCg-CCCggaGGGCgGgAGCGGG- -5'
9112 3' -68 NC_002512.2 + 215816 0.66 0.551308
Target:  5'- aCGgGGcCGGGgacuccCCUCCCGgCCggaacgCGCCg -3'
miRNA:   3'- gGCgCC-GCCC------GGAGGGCgGGa-----GCGGg -5'
9112 3' -68 NC_002512.2 + 125100 0.66 0.551308
Target:  5'- gCCGCGcGCGGa-C-CCCGCCgaCGCgCCg -3'
miRNA:   3'- -GGCGC-CGCCcgGaGGGCGGgaGCG-GG- -5'
9112 3' -68 NC_002512.2 + 95669 0.66 0.551308
Target:  5'- gCCGUGGggcuguaggGGGCCuucaggucgaucUCCCGCaCgUCGCCg -3'
miRNA:   3'- -GGCGCCg--------CCCGG------------AGGGCG-GgAGCGGg -5'
9112 3' -68 NC_002512.2 + 171804 0.66 0.551308
Target:  5'- cCCGaCGGCGcGCgCUCCUGCU---GCCCg -3'
miRNA:   3'- -GGC-GCCGCcCG-GAGGGCGGgagCGGG- -5'
9112 3' -68 NC_002512.2 + 43477 0.66 0.551308
Target:  5'- cUCGCGGCGucacaGGUCUUCaguGCUCaUGCCCa -3'
miRNA:   3'- -GGCGCCGC-----CCGGAGGg--CGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 12776 0.66 0.55042
Target:  5'- gCCGCaggacucGGCGGcGCC-CCCGCU---GCCCc -3'
miRNA:   3'- -GGCG-------CCGCC-CGGaGGGCGGgagCGGG- -5'
9112 3' -68 NC_002512.2 + 171856 0.66 0.55042
Target:  5'- gCCGCGGcCGGgagggggcggaacGCCgUCCuCGgcguccCCCUCGUCCc -3'
miRNA:   3'- -GGCGCC-GCC-------------CGG-AGG-GC------GGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 131113 0.66 0.549533
Target:  5'- gUGCGcCGGGCCaccuucucggcgCCCGUCUUCGUCa -3'
miRNA:   3'- gGCGCcGCCCGGa-----------GGGCGGGAGCGGg -5'
9112 3' -68 NC_002512.2 + 106816 0.66 0.548646
Target:  5'- -gGgGGCGaGGCCgccgcgaccuccucUUCCGCCaUCGCCUc -3'
miRNA:   3'- ggCgCCGC-CCGG--------------AGGGCGGgAGCGGG- -5'
9112 3' -68 NC_002512.2 + 74554 0.66 0.548646
Target:  5'- gCCGCGGCGacgggagcgagguuGGCgagaUCGUCCUCGgCCa -3'
miRNA:   3'- -GGCGCCGC--------------CCGgag-GGCGGGAGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.