miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 186211 0.65 0.950681
Target:  5'- cGGGCG-CCGAUGACgccgcggccgccaCCGAgggcgaggucccgGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCUGCUGa------------GGCU-------------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 14828 0.66 0.948692
Target:  5'- cGGuAGaCGccgCCGACGACggUGAGcUCCUCg -3'
miRNA:   3'- -CC-UC-GCa--GGCUGCUGagGCUC-AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 191747 0.66 0.948692
Target:  5'- cGGGGUGUCCGugG---CCG--UCCUCg -3'
miRNA:   3'- -CCUCGCAGGCugCugaGGCucAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 158937 0.66 0.948692
Target:  5'- gGGGGCG-CCGGCGGcCUCUcGGUCa-- -3'
miRNA:   3'- -CCUCGCaGGCUGCU-GAGGcUCAGgag -5'
9117 3' -57.3 NC_002512.2 + 146049 0.66 0.948692
Target:  5'- aGAGCGccUgCGACGAC-CCGGGcCCg- -3'
miRNA:   3'- cCUCGC--AgGCUGCUGaGGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 173300 0.66 0.948288
Target:  5'- uGGAGgG-CCGucauCGGCUCCaacgccgccugcgGGGUCUUCg -3'
miRNA:   3'- -CCUCgCaGGCu---GCUGAGG-------------CUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 149063 0.66 0.944556
Target:  5'- cGGGGCccgcUCCGcCGACgCCGAGgcgcgcgcgcgcUCCUCc -3'
miRNA:   3'- -CCUCGc---AGGCuGCUGaGGCUC------------AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 214771 0.66 0.944556
Target:  5'- --cGCaGUCCGGCGccggucgccCUCCGGGUCCc- -3'
miRNA:   3'- ccuCG-CAGGCUGCu--------GAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 178235 0.66 0.944556
Target:  5'- aGGGUcUCCGgggacggcGCGGuCUCCGGGUCCgUCg -3'
miRNA:   3'- cCUCGcAGGC--------UGCU-GAGGCUCAGG-AG- -5'
9117 3' -57.3 NC_002512.2 + 74599 0.66 0.944556
Target:  5'- cGGGGCccUCCGuCGGCUC-GAGccgCCUCg -3'
miRNA:   3'- -CCUCGc-AGGCuGCUGAGgCUCa--GGAG- -5'
9117 3' -57.3 NC_002512.2 + 112477 0.66 0.944556
Target:  5'- cGGAGCGgaUGACG-C-CCuGGUCCUCg -3'
miRNA:   3'- -CCUCGCagGCUGCuGaGGcUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 117125 0.66 0.944556
Target:  5'- cGGGGCcccgUCGGCGGCgUUCGAGUCgCUg -3'
miRNA:   3'- -CCUCGca--GGCUGCUG-AGGCUCAG-GAg -5'
9117 3' -57.3 NC_002512.2 + 212868 0.66 0.944556
Target:  5'- cGAGCGUCCccuccuccggaGACGGCggccauggaCCGAGUCg-- -3'
miRNA:   3'- cCUCGCAGG-----------CUGCUGa--------GGCUCAGgag -5'
9117 3' -57.3 NC_002512.2 + 134403 0.66 0.944556
Target:  5'- uGGAuGCGg-CGGCGGUUCCGGGUCUg- -3'
miRNA:   3'- -CCU-CGCagGCUGCUGAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 126461 0.66 0.944556
Target:  5'- gGGAcgacGCGUUCGACGGCgucuucgaCGAGUUCg- -3'
miRNA:   3'- -CCU----CGCAGGCUGCUGag------GCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 64936 0.66 0.944556
Target:  5'- -cGGgGUCCaGcACGuACUCCcGGUCCUCg -3'
miRNA:   3'- ccUCgCAGG-C-UGC-UGAGGcUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 95781 0.66 0.944131
Target:  5'- gGGGGCGUCCGAgcgguaGGCgCCGGGgcgcggaUCCg- -3'
miRNA:   3'- -CCUCGCAGGCUg-----CUGaGGCUC-------AGGag -5'
9117 3' -57.3 NC_002512.2 + 90195 0.66 0.941973
Target:  5'- aGGAGCGguaaCCaGACGACggucgucuucaggaCCGAGUCgaCg -3'
miRNA:   3'- -CCUCGCa---GG-CUGCUGa-------------GGCUCAGgaG- -5'
9117 3' -57.3 NC_002512.2 + 40830 0.66 0.940208
Target:  5'- aGAGCGccgCCGGCcGCUCCGAGgacauuaCCg- -3'
miRNA:   3'- cCUCGCa--GGCUGcUGAGGCUCa------GGag -5'
9117 3' -57.3 NC_002512.2 + 194643 0.66 0.940208
Target:  5'- cGGGGCacccGUCCGAgguCGACggaugaucugUCCGAguaacguguacaGUCCUCg -3'
miRNA:   3'- -CCUCG----CAGGCU---GCUG----------AGGCU------------CAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.