miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 17873 0.66 0.588701
Target:  5'- cGCGCaGGGC-CCGGgggaCGugauaGGCgGCGGCg -3'
miRNA:   3'- aCGUG-CCCGuGGUCg---GC-----CCGgCGCCG- -5'
9120 3' -66 NC_002512.2 + 30651 0.66 0.588701
Target:  5'- cGaCAuCGGGCugcGCCGGaucuaCCGGGCggCGCGGUc -3'
miRNA:   3'- aC-GU-GCCCG---UGGUC-----GGCCCG--GCGCCG- -5'
9120 3' -66 NC_002512.2 + 15457 0.66 0.588701
Target:  5'- cGUagACGGGgACgCGGUccuCGGG-CGCGGCg -3'
miRNA:   3'- aCG--UGCCCgUG-GUCG---GCCCgGCGCCG- -5'
9120 3' -66 NC_002512.2 + 113712 0.66 0.588701
Target:  5'- aGCGCGuGGaACUcGcCCGGcGCCaGCGGCu -3'
miRNA:   3'- aCGUGC-CCgUGGuC-GGCC-CGG-CGCCG- -5'
9120 3' -66 NC_002512.2 + 122671 0.66 0.588701
Target:  5'- gUGaC-CGcGGCuccCCGGCCGcGGCC-CGGCu -3'
miRNA:   3'- -AC-GuGC-CCGu--GGUCGGC-CCGGcGCCG- -5'
9120 3' -66 NC_002512.2 + 23472 0.66 0.588701
Target:  5'- cGCACGGaGaugauGCCGagcauGCUGGuGCUGCGGUu -3'
miRNA:   3'- aCGUGCC-Cg----UGGU-----CGGCC-CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 130357 0.66 0.588701
Target:  5'- cUGCaucgaGCGGGaCACgcgCGGCCaGGCCGCcaaccccgucuGGCa -3'
miRNA:   3'- -ACG-----UGCCC-GUG---GUCGGcCCGGCG-----------CCG- -5'
9120 3' -66 NC_002512.2 + 126911 0.66 0.588701
Target:  5'- cGCgGCGGGgGgaGGCCGGGCU--GGCg -3'
miRNA:   3'- aCG-UGCCCgUggUCGGCCCGGcgCCG- -5'
9120 3' -66 NC_002512.2 + 130227 0.66 0.588701
Target:  5'- gGCgGCGGGgaACCu-CUGGGCCcCGGCg -3'
miRNA:   3'- aCG-UGCCCg-UGGucGGCCCGGcGCCG- -5'
9120 3' -66 NC_002512.2 + 125104 0.66 0.588701
Target:  5'- cGCGCGGaccccgccgacGCGCCGuccGaCCGGGaCGaCGGCg -3'
miRNA:   3'- aCGUGCC-----------CGUGGU---C-GGCCCgGC-GCCG- -5'
9120 3' -66 NC_002512.2 + 111673 0.66 0.588701
Target:  5'- aGCACgaGGGCcCCgucgcaccagacGGCCucgGGGUCGCGGa -3'
miRNA:   3'- aCGUG--CCCGuGG------------UCGG---CCCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 6438 0.66 0.588701
Target:  5'- cGUcugGCGGGCGCCgAGaCagGGGUCGgcCGGCa -3'
miRNA:   3'- aCG---UGCCCGUGG-UC-Gg-CCCGGC--GCCG- -5'
9120 3' -66 NC_002512.2 + 108472 0.66 0.587771
Target:  5'- -cCGCGGGCGucucccuCCAcGCCaGGC-GCGGCu -3'
miRNA:   3'- acGUGCCCGU-------GGU-CGGcCCGgCGCCG- -5'
9120 3' -66 NC_002512.2 + 120796 0.66 0.587771
Target:  5'- gGCgGCGGGaCGgCGGCggucucucggaccCGGGaCGCGGCg -3'
miRNA:   3'- aCG-UGCCC-GUgGUCG-------------GCCCgGCGCCG- -5'
9120 3' -66 NC_002512.2 + 121330 0.66 0.587771
Target:  5'- gGCACGGugaccucGCuCCGGCggcgGGGCCGUuggacGGCg -3'
miRNA:   3'- aCGUGCC-------CGuGGUCGg---CCCGGCG-----CCG- -5'
9120 3' -66 NC_002512.2 + 222363 0.66 0.587771
Target:  5'- gGCACGGGgcCGCCuuccccggcgGGCUcuGGcuccucauggagcGCCGCGGCu -3'
miRNA:   3'- aCGUGCCC--GUGG----------UCGG--CC-------------CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 212844 0.66 0.585914
Target:  5'- gGCGCGGGCGCCguccguccccuccgAGCguccccuccucCGGaGaCgGCGGCc -3'
miRNA:   3'- aCGUGCCCGUGG--------------UCG-----------GCC-C-GgCGCCG- -5'
9120 3' -66 NC_002512.2 + 54061 0.66 0.58313
Target:  5'- gGCAgGaGGCGCCAcggacgagcggagccGCCGGGaCGCcGCc -3'
miRNA:   3'- aCGUgC-CCGUGGU---------------CGGCCCgGCGcCG- -5'
9120 3' -66 NC_002512.2 + 111842 0.66 0.58313
Target:  5'- aGCcCGGGCACgGGCCacGGCCuccuuggucuugucgGUGGUc -3'
miRNA:   3'- aCGuGCCCGUGgUCGGc-CCGG---------------CGCCG- -5'
9120 3' -66 NC_002512.2 + 20238 0.66 0.58313
Target:  5'- cGaCAgGGGCACgccgCAGCCGucgucguccucguccGGCCGCaGGUc -3'
miRNA:   3'- aC-GUgCCCGUG----GUCGGC---------------CCGGCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.