miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 189632 0.66 0.977373
Target:  5'- -gAUCGUCGcggUCGGCuucgUCGGGACGCGc -3'
miRNA:   3'- agUGGCAGCa--GGCCG----AGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 203144 0.66 0.977373
Target:  5'- aUCACCGUggCGUacagCGGCgccggCGAcGCGCAc -3'
miRNA:   3'- -AGUGGCA--GCAg---GCCGa----GCUuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 108283 0.66 0.977373
Target:  5'- aCAUCGggUCGUUCGGCUUGAugagcuCGguGu -3'
miRNA:   3'- aGUGGC--AGCAGGCCGAGCUuu----GCguC- -5'
9120 5' -55.4 NC_002512.2 + 100130 0.66 0.977373
Target:  5'- gUCACCGUCGUggaCGGCggCGGAcCGg-- -3'
miRNA:   3'- -AGUGGCAGCAg--GCCGa-GCUUuGCguc -5'
9120 5' -55.4 NC_002512.2 + 10437 0.66 0.977373
Target:  5'- gUCGCCGUCG---GGCacgGggGCGCGGa -3'
miRNA:   3'- -AGUGGCAGCaggCCGag-CuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 156527 0.66 0.977373
Target:  5'- gCGCgGggGUCCGGCggCGGgaacguguacgcGACGCGGg -3'
miRNA:   3'- aGUGgCagCAGGCCGa-GCU------------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 155964 0.66 0.977373
Target:  5'- -gGCCGUCGcguuucUCCGacagcGCUUGGAccGCGCGGu -3'
miRNA:   3'- agUGGCAGC------AGGC-----CGAGCUU--UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 196732 0.66 0.977373
Target:  5'- cCGCuuCGUCGUCCuguacGGCUCGAccggcGGCGUg- -3'
miRNA:   3'- aGUG--GCAGCAGG-----CCGAGCU-----UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 105627 0.66 0.977142
Target:  5'- -gGCCGUCGUcggucuccgagacCCGGC-CGAGGuagggcgagcCGCAGc -3'
miRNA:   3'- agUGGCAGCA-------------GGCCGaGCUUU----------GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 8287 0.66 0.976909
Target:  5'- cUCGCCGUCcaccgaccccccUCCGGgUCGAcggaGCAGg -3'
miRNA:   3'- -AGUGGCAGc-----------AGGCCgAGCUuug-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 172828 0.66 0.97498
Target:  5'- cUACCGuUCGcCCGGCgccccccggUCGucgGACGCGGc -3'
miRNA:   3'- aGUGGC-AGCaGGCCG---------AGCu--UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 226748 0.66 0.97498
Target:  5'- -gACCGggcUCCGGC-CGGacGACGCGGa -3'
miRNA:   3'- agUGGCagcAGGCCGaGCU--UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 228213 0.66 0.97498
Target:  5'- cCGCgGUCGaggCCGGg-CGAGACgGCGGg -3'
miRNA:   3'- aGUGgCAGCa--GGCCgaGCUUUG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 156327 0.66 0.97498
Target:  5'- -aGCuCGUCGagCGGCUgCGGGACcuGCAGa -3'
miRNA:   3'- agUG-GCAGCagGCCGA-GCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 2320 0.66 0.97498
Target:  5'- gCGCCGgcgGUCCGGaggcCUCGGu-CGCGGa -3'
miRNA:   3'- aGUGGCag-CAGGCC----GAGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 91925 0.66 0.97498
Target:  5'- gCGCCGUCGg-CGGC-CGAcuuggucuugGGCGCGa -3'
miRNA:   3'- aGUGGCAGCagGCCGaGCU----------UUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 21508 0.66 0.97498
Target:  5'- cUCGCag-CGUCgGGCcaccucgucgUCGAAACGCAc -3'
miRNA:   3'- -AGUGgcaGCAGgCCG----------AGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 81423 0.66 0.97498
Target:  5'- cCGCCGUCG--CGGCUcCGuccCGCGGg -3'
miRNA:   3'- aGUGGCAGCagGCCGA-GCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 126200 0.66 0.97498
Target:  5'- cCGCCG-CGUCCGccGCccucugcgacgUCGAGGCGCu- -3'
miRNA:   3'- aGUGGCaGCAGGC--CG-----------AGCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 78389 0.66 0.974731
Target:  5'- -aACCG-CGaggCCGGCUgGAgaucgagAGCGCGGg -3'
miRNA:   3'- agUGGCaGCa--GGCCGAgCU-------UUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.