miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 110543 0.66 0.98744
Target:  5'- gCGGAGAagGCCcGGAGCaCCU-CgGCGGCc -3'
miRNA:   3'- -GCUUCU--UGGaCUUCG-GGAgGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 181628 0.66 0.98744
Target:  5'- gGggGAACC-GAuGUCgUCCCACuuguuGGCc -3'
miRNA:   3'- gCuuCUUGGaCUuCGGgAGGGUG-----UCG- -5'
9121 3' -53.9 NC_002512.2 + 134170 0.66 0.98744
Target:  5'- aCGggGAGCCgucuucCCCUCCC--GGCc -3'
miRNA:   3'- -GCuuCUUGGacuuc-GGGAGGGugUCG- -5'
9121 3' -53.9 NC_002512.2 + 120521 0.66 0.98744
Target:  5'- aCGggGAGgCgc-GGCUUUCCCcCGGCg -3'
miRNA:   3'- -GCuuCUUgGacuUCGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 194634 0.66 0.98744
Target:  5'- gCGggGGACCUGcccGUCCUCUUcuccgaucggGCGGUc -3'
miRNA:   3'- -GCuuCUUGGACuu-CGGGAGGG----------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 221618 0.66 0.98744
Target:  5'- gCGAGGAgggagcggguccACCcgGcGGCCCUgcUCUACGGCg -3'
miRNA:   3'- -GCUUCU------------UGGa-CuUCGGGA--GGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 222355 0.66 0.98744
Target:  5'- gGAGGAGCggcacgGGGccGCCUUCCC-CGGCg -3'
miRNA:   3'- gCUUCUUGga----CUU--CGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 98317 0.66 0.98744
Target:  5'- uCGguGAGCacgCUGAAGUCgCUCCCG-AGCg -3'
miRNA:   3'- -GCuuCUUG---GACUUCGG-GAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 148255 0.66 0.98744
Target:  5'- gCGccGAGCCUGGacguggcgacGGCCCUggCCgACgAGCa -3'
miRNA:   3'- -GCuuCUUGGACU----------UCGGGA--GGgUG-UCG- -5'
9121 3' -53.9 NC_002512.2 + 80916 0.66 0.98744
Target:  5'- uGguGggUCgcgcgGgcGCCCUCCCgGCGGUa -3'
miRNA:   3'- gCuuCuuGGa----CuuCGGGAGGG-UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 44852 0.66 0.98744
Target:  5'- -cAGGAuCCUaGGGCUCUCCCcgacgACGGCg -3'
miRNA:   3'- gcUUCUuGGAcUUCGGGAGGG-----UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 226504 0.66 0.98744
Target:  5'- -uGGGGACCUGuGGGCCC-CgCGgAGCg -3'
miRNA:   3'- gcUUCUUGGAC-UUCGGGaGgGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 129863 0.66 0.98744
Target:  5'- gGAGGAGCCccuUGAGGCCg-CacgcgaCGCGGCc -3'
miRNA:   3'- gCUUCUUGG---ACUUCGGgaGg-----GUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 36207 0.66 0.98744
Target:  5'- --cGGGACCgacugcgGGAGCCCU-CCugGGUc -3'
miRNA:   3'- gcuUCUUGGa------CUUCGGGAgGGugUCG- -5'
9121 3' -53.9 NC_002512.2 + 9555 0.66 0.98744
Target:  5'- aCGAGGccguccGGCCccccGGAGCCCggCCCcCGGCc -3'
miRNA:   3'- -GCUUC------UUGGa---CUUCGGGa-GGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 110034 0.66 0.98744
Target:  5'- aGggGAACCUGAA-CCaggCgGCGGCg -3'
miRNA:   3'- gCuuCUUGGACUUcGGgagGgUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 226227 0.66 0.985858
Target:  5'- cCGggGAGCCgGAGcgaucuuaucGCCa--CCGCGGCc -3'
miRNA:   3'- -GCuuCUUGGaCUU----------CGGgagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 13463 0.66 0.985858
Target:  5'- gCGgcGAGCCUGgcGUCCccggaCCUGCuGCg -3'
miRNA:   3'- -GCuuCUUGGACuuCGGGa----GGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 54735 0.66 0.985858
Target:  5'- ---cGGACCUGAAGgCCUUCUGCGu- -3'
miRNA:   3'- gcuuCUUGGACUUCgGGAGGGUGUcg -5'
9121 3' -53.9 NC_002512.2 + 48433 0.66 0.985858
Target:  5'- uCGAccGGAuCCUGAcgaagacgacGGUgaUCCCGCAGCu -3'
miRNA:   3'- -GCU--UCUuGGACU----------UCGggAGGGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.