miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 3' -54.4 NC_002512.2 + 71549 0.66 0.982122
Target:  5'- gGGuguCGAAGACGguccGGAGCgcggacUCGcGCCGGa -3'
miRNA:   3'- gUCu--GCUUCUGCa---UCUCG------AGC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 228225 0.66 0.982122
Target:  5'- cCGGGCGAGacGGCGggaAGGGCgaaCGuGCCGGa -3'
miRNA:   3'- -GUCUGCUU--CUGCa--UCUCGa--GC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 17522 0.66 0.982122
Target:  5'- -cGGCGucGGCGUAGg---CGGCCAGc -3'
miRNA:   3'- guCUGCuuCUGCAUCucgaGCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 145757 0.66 0.982122
Target:  5'- uCGGACGAGGACcucaccgAGAcGCUgUGGCCGc -3'
miRNA:   3'- -GUCUGCUUCUGca-----UCU-CGA-GCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 24771 0.66 0.982122
Target:  5'- gAGACGAAGACcc---GCUCGGguCCGGg -3'
miRNA:   3'- gUCUGCUUCUGcaucuCGAGCC--GGUC- -5'
9126 3' -54.4 NC_002512.2 + 101377 0.66 0.981924
Target:  5'- gAGACGAuGACGUgcucgucGGAGCUCGuGgUGGu -3'
miRNA:   3'- gUCUGCUuCUGCA-------UCUCGAGC-CgGUC- -5'
9126 3' -54.4 NC_002512.2 + 129484 0.66 0.980071
Target:  5'- -cGACGAGGACGccgucgccaacUGGAGCUCGcuCCu- -3'
miRNA:   3'- guCUGCUUCUGC-----------AUCUCGAGCc-GGuc -5'
9126 3' -54.4 NC_002512.2 + 128179 0.66 0.980071
Target:  5'- gGGACGAGGuCGccGAGCg-GGCCGc -3'
miRNA:   3'- gUCUGCUUCuGCauCUCGagCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 11124 0.66 0.980071
Target:  5'- cCGGACGggGAacCGaGGAGUccgagGGCCGGa -3'
miRNA:   3'- -GUCUGCuuCU--GCaUCUCGag---CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 80711 0.66 0.980071
Target:  5'- gGGGCGAGGGCGcgcGGGCccgCGGgCGGc -3'
miRNA:   3'- gUCUGCUUCUGCau-CUCGa--GCCgGUC- -5'
9126 3' -54.4 NC_002512.2 + 115261 0.66 0.980071
Target:  5'- --cACGAuAGGCGgcggGGAGCgccUGGCCGGg -3'
miRNA:   3'- gucUGCU-UCUGCa---UCUCGa--GCCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 189911 0.66 0.980071
Target:  5'- -cGGCGAGGACGgcG-GCUcCGGUCu- -3'
miRNA:   3'- guCUGCUUCUGCauCuCGA-GCCGGuc -5'
9126 3' -54.4 NC_002512.2 + 98888 0.66 0.979423
Target:  5'- aAGACGAAGACGacggacgacagcuccGAGUuccgUCGGaCCAGa -3'
miRNA:   3'- gUCUGCUUCUGCau-------------CUCG----AGCC-GGUC- -5'
9126 3' -54.4 NC_002512.2 + 81025 0.66 0.977849
Target:  5'- gCAGGCGGAGGCGgc-AGC-CGGCg-- -3'
miRNA:   3'- -GUCUGCUUCUGCaucUCGaGCCGguc -5'
9126 3' -54.4 NC_002512.2 + 22069 0.66 0.977849
Target:  5'- gAGACGccGAGuCGggguucggAGAGCUCguccGGCCGGg -3'
miRNA:   3'- gUCUGC--UUCuGCa-------UCUCGAG----CCGGUC- -5'
9126 3' -54.4 NC_002512.2 + 202514 0.66 0.977849
Target:  5'- -cGGCGGAGGCGgAG-GCggCGGCgGGg -3'
miRNA:   3'- guCUGCUUCUGCaUCuCGa-GCCGgUC- -5'
9126 3' -54.4 NC_002512.2 + 158994 0.66 0.977849
Target:  5'- gGGGCGGAGGCGgcGgccccGGCgucCGcGCCGGg -3'
miRNA:   3'- gUCUGCUUCUGCauC-----UCGa--GC-CGGUC- -5'
9126 3' -54.4 NC_002512.2 + 110539 0.66 0.977849
Target:  5'- gCGGGCGGAGAaGgcccGGAGCaccucggCGGCCAu -3'
miRNA:   3'- -GUCUGCUUCUgCa---UCUCGa------GCCGGUc -5'
9126 3' -54.4 NC_002512.2 + 171728 0.66 0.977849
Target:  5'- gAGaACGAucgGGACGUcGAGCUCggGGCCc- -3'
miRNA:   3'- gUC-UGCU---UCUGCAuCUCGAG--CCGGuc -5'
9126 3' -54.4 NC_002512.2 + 57211 0.66 0.977849
Target:  5'- aGGACGGAGACG-AGGGCcgagacgCGGgCGu -3'
miRNA:   3'- gUCUGCUUCUGCaUCUCGa------GCCgGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.