miRNA display CGI


Results 1 - 20 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 125366 0.66 0.591024
Target:  5'- aGuCCGUggUCUCCUUCGCGGUCaCCgGACGc -3'
miRNA:   3'- gC-GGCA--GGAGGGGGCGCCGG-GG-CUGC- -5'
9131 3' -67.1 NC_002512.2 + 192149 0.66 0.591024
Target:  5'- gCGCgGgCCagaUCCCGCGGCCCCuGCc -3'
miRNA:   3'- -GCGgCaGGag-GGGGCGCCGGGGcUGc -5'
9131 3' -67.1 NC_002512.2 + 224327 0.66 0.591024
Target:  5'- uCGUCGUCUguUUUUCCGCGGCgCCG-CGc -3'
miRNA:   3'- -GCGGCAGG--AGGGGGCGCCGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 141780 0.66 0.591024
Target:  5'- uGaCCGUgaUCagCCCCGCGGUgUCGGCGa -3'
miRNA:   3'- gC-GGCA--GGagGGGGCGCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 1377 0.66 0.591024
Target:  5'- -uCCGUCuCUCCUCCGCGucccucucGCCCCuccGCGu -3'
miRNA:   3'- gcGGCAG-GAGGGGGCGC--------CGGGGc--UGC- -5'
9131 3' -67.1 NC_002512.2 + 121625 0.66 0.591024
Target:  5'- uGUCGagCUCCCCgUGCGGCCUCa--- -3'
miRNA:   3'- gCGGCagGAGGGG-GCGCCGGGGcugc -5'
9131 3' -67.1 NC_002512.2 + 117098 0.66 0.591024
Target:  5'- gGCCGcCCUggaCCCgGCacagcggcacggGGCCCCGuCGg -3'
miRNA:   3'- gCGGCaGGAg--GGGgCG------------CCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 110539 0.66 0.591024
Target:  5'- uCGCCGugaccggcguuUCCgCCCCCGCgcgggaGGUCCUGcCGg -3'
miRNA:   3'- -GCGGC-----------AGGaGGGGGCG------CCGGGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 133153 0.66 0.591024
Target:  5'- uCGCuCGUCCggUUCCCGCGGgCCgGcccGCGg -3'
miRNA:   3'- -GCG-GCAGGa-GGGGGCGCCgGGgC---UGC- -5'
9131 3' -67.1 NC_002512.2 + 13661 0.66 0.591024
Target:  5'- uCGCCGcggcUCCagCUCCCGgacgaggcgaCGGCCgCGGCGg -3'
miRNA:   3'- -GCGGC----AGGa-GGGGGC----------GCCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 2499 0.66 0.590117
Target:  5'- gGCCuUggggaacggaUCUCCCCCgacgccgGCGGCCCCGGg- -3'
miRNA:   3'- gCGGcA----------GGAGGGGG-------CGCCGGGGCUgc -5'
9131 3' -67.1 NC_002512.2 + 6619 0.66 0.590117
Target:  5'- gCGgCGUCCcgCCCCCcgacgacGCGGaCgCCCGAgGa -3'
miRNA:   3'- -GCgGCAGGa-GGGGG-------CGCC-G-GGGCUgC- -5'
9131 3' -67.1 NC_002512.2 + 192895 0.66 0.588303
Target:  5'- gCGCCGUCgCg-CUCCGCGGCgguccagagccgccUCCGAUGc -3'
miRNA:   3'- -GCGGCAG-GagGGGGCGCCG--------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 45908 0.66 0.581962
Target:  5'- gGCUGUCCg-CCCCGacaGGCgaCGACGc -3'
miRNA:   3'- gCGGCAGGagGGGGCg--CCGggGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 187311 0.66 0.581962
Target:  5'- cCGCCG--CUCgCCUCGCGGCgCCCGcCc -3'
miRNA:   3'- -GCGGCagGAG-GGGGCGCCG-GGGCuGc -5'
9131 3' -67.1 NC_002512.2 + 138963 0.66 0.581962
Target:  5'- gGCCGcgCCggCCCCguuCGCGGCCgccaguCCGGCc -3'
miRNA:   3'- gCGGCa-GGa-GGGG---GCGCCGG------GGCUGc -5'
9131 3' -67.1 NC_002512.2 + 178336 0.66 0.581962
Target:  5'- gGCCGUCUcguacUCgCCCCGCaGUcuccggaucuccUCCGACGg -3'
miRNA:   3'- gCGGCAGG-----AG-GGGGCGcCG------------GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 194644 0.66 0.581962
Target:  5'- uGcCCGUCCUCUUCUccgaucggGCGGUCCUGcACGc -3'
miRNA:   3'- gC-GGCAGGAGGGGG--------CGCCGGGGC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 43652 0.66 0.581962
Target:  5'- gGaCCGggaCCUCgCCCUcggugGCGGCCgCGGCGu -3'
miRNA:   3'- gC-GGCa--GGAG-GGGG-----CGCCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 202026 0.66 0.581962
Target:  5'- gGCCGgg-UCCCCCGcCGGUCCgGcucGCGg -3'
miRNA:   3'- gCGGCaggAGGGGGC-GCCGGGgC---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.