miRNA display CGI


Results 21 - 40 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 3' -67.1 NC_002512.2 + 222370 0.73 0.232796
Target:  5'- gGCCGcCUUCCCCgGCgGGCUCUGGCu -3'
miRNA:   3'- gCGGCaGGAGGGGgCG-CCGGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 221497 0.66 0.563928
Target:  5'- uCGgCGUCCuauuuUCCUgCGCGGCgCCG-CGg -3'
miRNA:   3'- -GCgGCAGG-----AGGGgGCGCCGgGGCuGC- -5'
9131 3' -67.1 NC_002512.2 + 220558 0.67 0.493634
Target:  5'- aCGCCGUCUaCCUggCCGUGcGCcgCCCGAUGg -3'
miRNA:   3'- -GCGGCAGGaGGG--GGCGC-CG--GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 220178 0.69 0.419739
Target:  5'- gCGUCGggaggagguUCCgcgaaCCCCCGCcgGGgCCCGACGg -3'
miRNA:   3'- -GCGGC---------AGGa----GGGGGCG--CCgGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 219438 0.68 0.43559
Target:  5'- gGCgG-CCUCCUCCGCGcccccGUgCCCGACGg -3'
miRNA:   3'- gCGgCaGGAGGGGGCGC-----CG-GGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 219181 0.66 0.53452
Target:  5'- cCGCCGUCggcuaccgcUUCCuguaCCCGCugcacugccgggccGGCCUCGGCGa -3'
miRNA:   3'- -GCGGCAG---------GAGG----GGGCG--------------CCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 218809 0.78 0.098053
Target:  5'- cCGCCGUCCgcuccgucucgCCCuCCGCGGCCCUGcucuGCGa -3'
miRNA:   3'- -GCGGCAGGa----------GGG-GGCGCCGGGGC----UGC- -5'
9131 3' -67.1 NC_002512.2 + 218397 0.69 0.386875
Target:  5'- uCGUCGUCCUCuccgucgucgucguCCUCGCGGucuccgccccuuCCCCGGCc -3'
miRNA:   3'- -GCGGCAGGAG--------------GGGGCGCC------------GGGGCUGc -5'
9131 3' -67.1 NC_002512.2 + 218185 0.72 0.267009
Target:  5'- aCGCCGgcUCCUgccucgccccucgggCCCCCGCcucgGGCCgCGGCGg -3'
miRNA:   3'- -GCGGC--AGGA---------------GGGGGCG----CCGGgGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 217692 0.69 0.396631
Target:  5'- gGCUGgCuCUUCCCCGcCGGCgUCGACGa -3'
miRNA:   3'- gCGGCaG-GAGGGGGC-GCCGgGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 216308 0.69 0.389112
Target:  5'- aCGUgGgucaCCUgCaUCUGCGGCCCCGACGc -3'
miRNA:   3'- -GCGgCa---GGAgG-GGGCGCCGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 215256 0.7 0.367124
Target:  5'- aCGCCG-CCUUCCUcaagCGCGGCCuCCGcCa -3'
miRNA:   3'- -GCGGCaGGAGGGG----GCGCCGG-GGCuGc -5'
9131 3' -67.1 NC_002512.2 + 214931 0.69 0.374357
Target:  5'- gGCCGcggcuUCgUCCuCCCGUGGCCgCgGACGc -3'
miRNA:   3'- gCGGC-----AGgAGG-GGGCGCCGG-GgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 214652 0.67 0.51958
Target:  5'- uCGCaGUCuCUCCuCCCG-GcGCCUCGGCGa -3'
miRNA:   3'- -GCGgCAG-GAGG-GGGCgC-CGGGGCUGC- -5'
9131 3' -67.1 NC_002512.2 + 214567 0.7 0.346005
Target:  5'- uCGCCGUCgUCCCCUcCcGCCUgGGCGa -3'
miRNA:   3'- -GCGGCAGgAGGGGGcGcCGGGgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 212851 0.7 0.339162
Target:  5'- gCGCCGUCCgUCCCCUccgaGCGuCCCCuccuccggaGACGg -3'
miRNA:   3'- -GCGGCAGG-AGGGGG----CGCcGGGG---------CUGC- -5'
9131 3' -67.1 NC_002512.2 + 212005 0.71 0.293423
Target:  5'- cCGCCG-CCuaucacgUCCCCCG-GGCCCUGcGCGa -3'
miRNA:   3'- -GCGGCaGG-------AGGGGGCgCCGGGGC-UGC- -5'
9131 3' -67.1 NC_002512.2 + 211729 0.68 0.459174
Target:  5'- aGCUGUgCCUCggccuggCCCgcgaCGCGGCCCgGGCGc -3'
miRNA:   3'- gCGGCA-GGAG-------GGG----GCGCCGGGgCUGC- -5'
9131 3' -67.1 NC_002512.2 + 210527 0.69 0.411946
Target:  5'- gGCCG-CCgagCCCCCGaCGGUCC-GGCa -3'
miRNA:   3'- gCGGCaGGa--GGGGGC-GCCGGGgCUGc -5'
9131 3' -67.1 NC_002512.2 + 209105 0.67 0.47667
Target:  5'- gGUCGUCa--CCCCGU-GUCCCGACGu -3'
miRNA:   3'- gCGGCAGgagGGGGCGcCGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.