Results 21 - 40 of 415 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9131 | 3' | -67.1 | NC_002512.2 | + | 155711 | 0.66 | 0.563928 |
Target: 5'- uGCCGgcgCCUCCaCCUggaucccgaGCGGaCCCuCGGCu -3' miRNA: 3'- gCGGCa--GGAGG-GGG---------CGCC-GGG-GCUGc -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 177909 | 0.66 | 0.567524 |
Target: 5'- uCGUCGUCCUUagcagcgucucgucgCUCgGCGGCUCCG-CGu -3' miRNA: 3'- -GCGGCAGGAG---------------GGGgCGCCGGGGCuGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 202026 | 0.66 | 0.581962 |
Target: 5'- gGCCGgg-UCCCCCGcCGGUCCgGcucGCGg -3' miRNA: 3'- gCGGCaggAGGGGGC-GCCGGGgC---UGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 141780 | 0.66 | 0.591024 |
Target: 5'- uGaCCGUgaUCagCCCCGCGGUgUCGGCGa -3' miRNA: 3'- gC-GGCA--GGagGGGGCGCCGgGGCUGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 166512 | 0.66 | 0.549609 |
Target: 5'- aGCgGUCCggaucggCCCCCGaCGGUgaggacgaagacgauCCCGAgGg -3' miRNA: 3'- gCGgCAGGa------GGGGGC-GCCG---------------GGGCUgC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 226795 | 0.66 | 0.554966 |
Target: 5'- aCGCCGUggucucggCCgCCgCCGUGGCCgCCGcCGc -3' miRNA: 3'- -GCGGCA--------GGaGGgGGCGCCGG-GGCuGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 99630 | 0.66 | 0.572929 |
Target: 5'- gGUCGUCg-CCCUCGgaGGgCCCGGCGc -3' miRNA: 3'- gCGGCAGgaGGGGGCg-CCgGGGCUGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 117098 | 0.66 | 0.591024 |
Target: 5'- gGCCGcCCUggaCCCgGCacagcggcacggGGCCCCGuCGg -3' miRNA: 3'- gCGGCaGGAg--GGGgCG------------CCGGGGCuGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 140958 | 0.66 | 0.560339 |
Target: 5'- gCGCCGcUUCUCCCCCGaacugcauguccGCuCCCGaACGg -3' miRNA: 3'- -GCGGC-AGGAGGGGGCgc----------CG-GGGC-UGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 192149 | 0.66 | 0.591024 |
Target: 5'- gCGCgGgCCagaUCCCGCGGCCCCuGCc -3' miRNA: 3'- -GCGgCaGGag-GGGGCGCCGGGGcUGc -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 197678 | 0.66 | 0.572027 |
Target: 5'- aCGCCcUCCUCaacggacaCCCGCccugccugcccauGGCCCgCGACc -3' miRNA: 3'- -GCGGcAGGAGg-------GGGCG-------------CCGGG-GCUGc -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 221497 | 0.66 | 0.563928 |
Target: 5'- uCGgCGUCCuauuuUCCUgCGCGGCgCCG-CGg -3' miRNA: 3'- -GCgGCAGG-----AGGGgGCGCCGgGGCuGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 194313 | 0.66 | 0.572929 |
Target: 5'- gGUCa-CCUUCCUCGUGGCCCgGgACGg -3' miRNA: 3'- gCGGcaGGAGGGGGCGCCGGGgC-UGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 194644 | 0.66 | 0.581962 |
Target: 5'- uGcCCGUCCUCUUCUccgaucggGCGGUCCUGcACGc -3' miRNA: 3'- gC-GGCAGGAGGGGG--------CGCCGGGGC-UGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 187311 | 0.66 | 0.581962 |
Target: 5'- cCGCCG--CUCgCCUCGCGGCgCCCGcCc -3' miRNA: 3'- -GCGGCagGAG-GGGGCGCCG-GGGCuGc -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 121625 | 0.66 | 0.591024 |
Target: 5'- uGUCGagCUCCCCgUGCGGCCUCa--- -3' miRNA: 3'- gCGGCagGAGGGG-GCGCCGGGGcugc -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 155876 | 0.66 | 0.540716 |
Target: 5'- aCGCUGUUCgUCCCCGaCGGCgggcgcggggacgagUCCGGCGc -3' miRNA: 3'- -GCGGCAGGaGGGGGC-GCCG---------------GGGCUGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 185445 | 0.66 | 0.546046 |
Target: 5'- gGCCGUCCUguccgCCCucugcuccuucgCCGUGGUCCUGcCGc -3' miRNA: 3'- gCGGCAGGA-----GGG------------GGCGCCGGGGCuGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 108002 | 0.66 | 0.554966 |
Target: 5'- uCGCCGagCgUCCCCCGCGaccuCCCCcuCGg -3' miRNA: 3'- -GCGGCa-GgAGGGGGCGCc---GGGGcuGC- -5' |
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9131 | 3' | -67.1 | NC_002512.2 | + | 167054 | 0.66 | 0.554966 |
Target: 5'- uCGCCG-CCUCCaucaCCaagauCGGCCgCGACa -3' miRNA: 3'- -GCGGCaGGAGGg---GGc----GCCGGgGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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