Results 1 - 20 of 571 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9131 | 5' | -53.1 | NC_002512.2 | + | 71888 | 0.66 | 0.996535 |
Target: 5'- gGCGUCGAAcuccucccggucgccGAUGucGACGcuguCGGGCa -3' miRNA: 3'- gCGCAGCUU---------------CUGCuuCUGCu---GCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 88758 | 0.66 | 0.996535 |
Target: 5'- gGCGUCcucgaaacugaucuuGAAG--GggGACGGCgGGACGg -3' miRNA: 3'- gCGCAG---------------CUUCugCuuCUGCUG-CCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 41294 | 0.66 | 0.996482 |
Target: 5'- gGCGUCcuugcggaagGAAGACGGAauuuucguuguccccGAacacgaccggaucCGACGGACGa -3' miRNA: 3'- gCGCAG----------CUUCUGCUU---------------CU-------------GCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 195616 | 0.66 | 0.996318 |
Target: 5'- gGCGgccaccugcUGGAGACGGgacgGGACGACcGGCGg -3' miRNA: 3'- gCGCa--------GCUUCUGCU----UCUGCUGcCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 33004 | 0.66 | 0.996318 |
Target: 5'- aCGcCGUCGAugAGcauccGCGGcAGAgCGACGGGCa -3' miRNA: 3'- -GC-GCAGCU--UC-----UGCU-UCU-GCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 127273 | 0.66 | 0.996318 |
Target: 5'- gGCGUUcccccGGGCGuuGGCGGCGGcCGa -3' miRNA: 3'- gCGCAGcu---UCUGCuuCUGCUGCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 157168 | 0.66 | 0.996318 |
Target: 5'- cCGgG-CGgcGugGgcGGCGGCGcGACGa -3' miRNA: 3'- -GCgCaGCuuCugCuuCUGCUGC-CUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 77086 | 0.66 | 0.996318 |
Target: 5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3' miRNA: 3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 59306 | 0.66 | 0.996318 |
Target: 5'- uCGgGUCG-GGACac-GGCGACGGAgGa -3' miRNA: 3'- -GCgCAGCuUCUGcuuCUGCUGCCUgC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 207511 | 0.66 | 0.996318 |
Target: 5'- cCGCGacCGAcGACGAGGACGG-GGcCGc -3' miRNA: 3'- -GCGCa-GCUuCUGCUUCUGCUgCCuGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 121163 | 0.66 | 0.996318 |
Target: 5'- cCGCGgcccAGGGCG-AGGCGuucuCGGACGa -3' miRNA: 3'- -GCGCagc-UUCUGCuUCUGCu---GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 221589 | 0.66 | 0.996318 |
Target: 5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3' miRNA: 3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 102938 | 0.66 | 0.996318 |
Target: 5'- aGCGccaGAGGGuCGAccgGGGCG-CGGGCGg -3' miRNA: 3'- gCGCag-CUUCU-GCU---UCUGCuGCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 223911 | 0.66 | 0.996318 |
Target: 5'- aGCGgCGcGGGCGAgaGGuCGAgcCGGACGg -3' miRNA: 3'- gCGCaGCuUCUGCU--UCuGCU--GCCUGC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 123916 | 0.66 | 0.996318 |
Target: 5'- aGCGg-GAAGGu--GGACGGCGGGCu -3' miRNA: 3'- gCGCagCUUCUgcuUCUGCUGCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 95443 | 0.66 | 0.996318 |
Target: 5'- uCGuCGUUGAAGGCcAGGGCGAggaacccccUGGGCa -3' miRNA: 3'- -GC-GCAGCUUCUGcUUCUGCU---------GCCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 38218 | 0.66 | 0.996318 |
Target: 5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3' miRNA: 3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 139279 | 0.66 | 0.996318 |
Target: 5'- gCGCG-CGggGGCGAAGGgGGgcgcccgcccCGGGgGa -3' miRNA: 3'- -GCGCaGCuuCUGCUUCUgCU----------GCCUgC- -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 122057 | 0.66 | 0.996318 |
Target: 5'- gGCGUCGgcGGCuguGACGACagcggGGGCu -3' miRNA: 3'- gCGCAGCuuCUGcuuCUGCUG-----CCUGc -5' |
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9131 | 5' | -53.1 | NC_002512.2 | + | 204875 | 0.66 | 0.996318 |
Target: 5'- cCGCGacCGAcGGCGAgcucucGGACGGCGaGCGg -3' miRNA: 3'- -GCGCa-GCUuCUGCU------UCUGCUGCcUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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