miRNA display CGI


Results 1 - 20 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 71888 0.66 0.996535
Target:  5'- gGCGUCGAAcuccucccggucgccGAUGucGACGcuguCGGGCa -3'
miRNA:   3'- gCGCAGCUU---------------CUGCuuCUGCu---GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 88758 0.66 0.996535
Target:  5'- gGCGUCcucgaaacugaucuuGAAG--GggGACGGCgGGACGg -3'
miRNA:   3'- gCGCAG---------------CUUCugCuuCUGCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 41294 0.66 0.996482
Target:  5'- gGCGUCcuugcggaagGAAGACGGAauuuucguuguccccGAacacgaccggaucCGACGGACGa -3'
miRNA:   3'- gCGCAG----------CUUCUGCUU---------------CU-------------GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 122057 0.66 0.996318
Target:  5'- gGCGUCGgcGGCuguGACGACagcggGGGCu -3'
miRNA:   3'- gCGCAGCuuCUGcuuCUGCUG-----CCUGc -5'
9131 5' -53.1 NC_002512.2 + 221589 0.66 0.996318
Target:  5'- -cCGUCGAcccGGAgGggGGuCGGUGGACGg -3'
miRNA:   3'- gcGCAGCU---UCUgCuuCU-GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 127273 0.66 0.996318
Target:  5'- gGCGUUcccccGGGCGuuGGCGGCGGcCGa -3'
miRNA:   3'- gCGCAGcu---UCUGCuuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 77086 0.66 0.996318
Target:  5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3'
miRNA:   3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 123916 0.66 0.996318
Target:  5'- aGCGg-GAAGGu--GGACGGCGGGCu -3'
miRNA:   3'- gCGCagCUUCUgcuUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 121163 0.66 0.996318
Target:  5'- cCGCGgcccAGGGCG-AGGCGuucuCGGACGa -3'
miRNA:   3'- -GCGCagc-UUCUGCuUCUGCu---GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 102938 0.66 0.996318
Target:  5'- aGCGccaGAGGGuCGAccgGGGCG-CGGGCGg -3'
miRNA:   3'- gCGCag-CUUCU-GCU---UCUGCuGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 59306 0.66 0.996318
Target:  5'- uCGgGUCG-GGACac-GGCGACGGAgGa -3'
miRNA:   3'- -GCgCAGCuUCUGcuuCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 38218 0.66 0.996318
Target:  5'- cCGCGaCGAuaGCGGAGACGGCcucgcGACa -3'
miRNA:   3'- -GCGCaGCUucUGCUUCUGCUGc----CUGc -5'
9131 5' -53.1 NC_002512.2 + 204875 0.66 0.996318
Target:  5'- cCGCGacCGAcGGCGAgcucucGGACGGCGaGCGg -3'
miRNA:   3'- -GCGCa-GCUuCUGCU------UCUGCUGCcUGC- -5'
9131 5' -53.1 NC_002512.2 + 207511 0.66 0.996318
Target:  5'- cCGCGacCGAcGACGAGGACGG-GGcCGc -3'
miRNA:   3'- -GCGCa-GCUuCUGCUUCUGCUgCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 139279 0.66 0.996318
Target:  5'- gCGCG-CGggGGCGAAGGgGGgcgcccgcccCGGGgGa -3'
miRNA:   3'- -GCGCaGCuuCUGCUUCUgCU----------GCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 157168 0.66 0.996318
Target:  5'- cCGgG-CGgcGugGgcGGCGGCGcGACGa -3'
miRNA:   3'- -GCgCaGCuuCugCuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 195616 0.66 0.996318
Target:  5'- gGCGgccaccugcUGGAGACGGgacgGGACGACcGGCGg -3'
miRNA:   3'- gCGCa--------GCUUCUGCU----UCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 95443 0.66 0.996318
Target:  5'- uCGuCGUUGAAGGCcAGGGCGAggaacccccUGGGCa -3'
miRNA:   3'- -GC-GCAGCUUCUGcUUCUGCU---------GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 33004 0.66 0.996318
Target:  5'- aCGcCGUCGAugAGcauccGCGGcAGAgCGACGGGCa -3'
miRNA:   3'- -GC-GCAGCU--UC-----UGCU-UCU-GCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 223911 0.66 0.996318
Target:  5'- aGCGgCGcGGGCGAgaGGuCGAgcCGGACGg -3'
miRNA:   3'- gCGCaGCuUCUGCU--UCuGCU--GCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.