miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 49832 0.66 0.820787
Target:  5'- aGGGGGucguCCggcacCCGcACCGCCUgggaUCGGAGa -3'
miRNA:   3'- -CCCCCu---GGaa---GGC-UGGCGGG----GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 57030 0.66 0.820787
Target:  5'- gGGGGGAgCgga-GGCCGCgUCCGAc- -3'
miRNA:   3'- -CCCCCUgGaaggCUGGCGgGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 118143 0.66 0.820787
Target:  5'- cGGGGGcggaACCgcgacauggCGACCguGCCCgCCGGAGa -3'
miRNA:   3'- -CCCCC----UGGaag------GCUGG--CGGG-GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 158855 0.66 0.820787
Target:  5'- gGGGGGACgUcgucgUCGACCGgccggcggcggcCCCCCGu-- -3'
miRNA:   3'- -CCCCCUGgAa----GGCUGGC------------GGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 132016 0.66 0.820787
Target:  5'- gGGGGGACCUcggcggcgacgUCGuCgGCCagggaCCGGAGg -3'
miRNA:   3'- -CCCCCUGGAa----------GGCuGgCGGg----GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 219239 0.66 0.820787
Target:  5'- -cGGGAUCgugCuCGGCCGCCUCUGGc- -3'
miRNA:   3'- ccCCCUGGaa-G-GCUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 107009 0.66 0.820787
Target:  5'- cGGGGucGGCCgagagCCgGGCgCGCUCCCGAc- -3'
miRNA:   3'- -CCCC--CUGGaa---GG-CUG-GCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 4122 0.66 0.819994
Target:  5'- cGGGaacagauGGAUCccaugucCCGGCCGCgCCCCGAc- -3'
miRNA:   3'- -CCC-------CCUGGaa-----GGCUGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 126918 0.66 0.816006
Target:  5'- gGGGGaGGCCgggcuggcgauacCCGcCCGCgCCCCGGu- -3'
miRNA:   3'- -CCCC-CUGGaa-----------GGCuGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 68033 0.66 0.81279
Target:  5'- cGGGaGGACCg-CCGacGCCGUgUCCGGAa -3'
miRNA:   3'- -CCC-CCUGGaaGGC--UGGCGgGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 189766 0.66 0.81279
Target:  5'- cGGGGGACaaaaUCCGuccucCCGCCguaCGAGGc -3'
miRNA:   3'- -CCCCCUGga--AGGCu----GGCGGgg-GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 182275 0.66 0.81279
Target:  5'- cGGGGaACUgcacgUCCGuCCGCuCCCUGGc- -3'
miRNA:   3'- cCCCC-UGGa----AGGCuGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 194545 0.66 0.81279
Target:  5'- -cGGGACaa-CCGuaACCGCCCCgGGAa -3'
miRNA:   3'- ccCCCUGgaaGGC--UGGCGGGGgCUUc -5'
9153 3' -61.6 NC_002512.2 + 121348 0.66 0.81279
Target:  5'- cGGcGGACCUucUCCG-CCGUcggguCCCCGGc- -3'
miRNA:   3'- cCC-CCUGGA--AGGCuGGCG-----GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 1923 0.66 0.81279
Target:  5'- cGGGGcCCUccucUCCGGCU-CCCCCGc-- -3'
miRNA:   3'- cCCCCuGGA----AGGCUGGcGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 72757 0.66 0.81279
Target:  5'- --cGGGCCcgCCG-CCGaCCCCCGAc- -3'
miRNA:   3'- cccCCUGGaaGGCuGGC-GGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 10451 0.66 0.804653
Target:  5'- cGGGGGcgcggaggagGCCg-CCG-CCGCCCCgGGc- -3'
miRNA:   3'- -CCCCC----------UGGaaGGCuGGCGGGGgCUuc -5'
9153 3' -61.6 NC_002512.2 + 27871 0.66 0.804653
Target:  5'- cGGGGGACCcggCC--CCGCCaCCUGuccGAGa -3'
miRNA:   3'- -CCCCCUGGaa-GGcuGGCGG-GGGC---UUC- -5'
9153 3' -61.6 NC_002512.2 + 129927 0.66 0.804653
Target:  5'- cGGGGGGCUgUCCGACgaacCCUUCGAc- -3'
miRNA:   3'- -CCCCCUGGaAGGCUGgc--GGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 130239 0.66 0.804653
Target:  5'- cGGGGAUCggcUCgGGCgccggGCCCuCCGAGGg -3'
miRNA:   3'- cCCCCUGGa--AGgCUGg----CGGG-GGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.