miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 5' -60.9 NC_002512.2 + 219021 0.66 0.816364
Target:  5'- uGCUGCUGcgaCgUGCuggucuacgUCGUCGgCCGCg -3'
miRNA:   3'- gCGACGACua-GgACG---------AGCGGCgGGCG- -5'
9154 5' -60.9 NC_002512.2 + 213043 0.66 0.816364
Target:  5'- gGCUGCggggGAUCgaGaUCGCCcuGCCCaGCc -3'
miRNA:   3'- gCGACGa---CUAGgaCgAGCGG--CGGG-CG- -5'
9154 5' -60.9 NC_002512.2 + 126364 0.66 0.816364
Target:  5'- aCGC-GUUcacGGUCCU-CUgGCCGCCCGg -3'
miRNA:   3'- -GCGaCGA---CUAGGAcGAgCGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 81654 0.66 0.815546
Target:  5'- gCGUUGCUGAUggcgaacaCCUugUCGUacaugagCGCCCGCa -3'
miRNA:   3'- -GCGACGACUA--------GGAcgAGCG-------GCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 208393 0.66 0.811432
Target:  5'- aCGCUGC-GAggcccgCCUGCggaugcucuacgggCGCCGCUCccgGCg -3'
miRNA:   3'- -GCGACGaCUa-----GGACGa-------------GCGGCGGG---CG- -5'
9154 5' -60.9 NC_002512.2 + 196839 0.66 0.811432
Target:  5'- gGCUGCggcgGAUggacgccgucuacgaCCUGCcCGUCGCucugCCGCg -3'
miRNA:   3'- gCGACGa---CUA---------------GGACGaGCGGCG----GGCG- -5'
9154 5' -60.9 NC_002512.2 + 82669 0.66 0.808115
Target:  5'- uCGCUGUUuucgcGGUCCcGCUCggGCUGUCgGCg -3'
miRNA:   3'- -GCGACGA-----CUAGGaCGAG--CGGCGGgCG- -5'
9154 5' -60.9 NC_002512.2 + 123292 0.66 0.808115
Target:  5'- gCGCcgGCUGGcCCgGUUCGCCaagaagcggguGUCCGCc -3'
miRNA:   3'- -GCGa-CGACUaGGaCGAGCGG-----------CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 2316 0.66 0.808115
Target:  5'- uGCUGCgccggcGGUCCggagGCcucggUCGCgGaCCCGCc -3'
miRNA:   3'- gCGACGa-----CUAGGa---CG-----AGCGgC-GGGCG- -5'
9154 5' -60.9 NC_002512.2 + 90389 0.66 0.808115
Target:  5'- aCGCU-CgaGGUCUUGCcggCGCCGgCCGUg -3'
miRNA:   3'- -GCGAcGa-CUAGGACGa--GCGGCgGGCG- -5'
9154 5' -60.9 NC_002512.2 + 116151 0.66 0.808115
Target:  5'- cCGC-GCaccucggCCcGCagaUCGCCGCCCGCg -3'
miRNA:   3'- -GCGaCGacua---GGaCG---AGCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 144643 0.66 0.808115
Target:  5'- aCGCgGCgGAUcuacgaccaCCUGUUCGCgGUCCGg -3'
miRNA:   3'- -GCGaCGaCUA---------GGACGAGCGgCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 91799 0.66 0.805613
Target:  5'- gGCUGgaGGacucggugggucguUCCUGCaggaccugaCGCCGUCCGUc -3'
miRNA:   3'- gCGACgaCU--------------AGGACGa--------GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 220379 0.66 0.799724
Target:  5'- cCGCcgUGCUGGggCCgGCcgucgucuaccCGCCGCUCGCg -3'
miRNA:   3'- -GCG--ACGACUa-GGaCGa----------GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 185044 0.66 0.799724
Target:  5'- aGCccuagGAUCCUGgaCGCCGaCCCGg -3'
miRNA:   3'- gCGacga-CUAGGACgaGCGGC-GGGCg -5'
9154 5' -60.9 NC_002512.2 + 185471 0.66 0.799724
Target:  5'- uCGCcG-UGGUCCUGC-CGCCGCaggucauggCGCa -3'
miRNA:   3'- -GCGaCgACUAGGACGaGCGGCGg--------GCG- -5'
9154 5' -60.9 NC_002512.2 + 217577 0.66 0.799724
Target:  5'- gGCgaGCcGGUCCgGCggCGCCGCCuCGg -3'
miRNA:   3'- gCGa-CGaCUAGGaCGa-GCGGCGG-GCg -5'
9154 5' -60.9 NC_002512.2 + 144483 0.66 0.799724
Target:  5'- cCGCgUGgaGuucGUCCUGCagacgcugCGCUGCCCGg -3'
miRNA:   3'- -GCG-ACgaC---UAGGACGa-------GCGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 187296 0.66 0.798877
Target:  5'- gGCUuCgGGUCCgccccgccGCUCGCCucgcggcGCCCGCc -3'
miRNA:   3'- gCGAcGaCUAGGa-------CGAGCGG-------CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 54883 0.66 0.794624
Target:  5'- -cCUGCUGGgacgaagaUCCUGCcgaaggaggugcugCGCUGCCUGUg -3'
miRNA:   3'- gcGACGACU--------AGGACGa-------------GCGGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.