miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 7482 0.66 0.991485
Target:  5'- gGCCCccgccGAAGCCGCGGCgcuccaugaggagccAGAGcccgccggggaAGGCGGc -3'
miRNA:   3'- -UGGGu----CUUUGGUGUCG---------------UCUC-----------UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 204817 0.66 0.991029
Target:  5'- uCCCGGggG-CGCGGCGGcuccguccgggaGGAcGACGGc -3'
miRNA:   3'- uGGGUCuuUgGUGUCGUC------------UCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 78101 0.66 0.991029
Target:  5'- cGCCCgAGAGACCAaaacccuccCGGGGAGAUGu -3'
miRNA:   3'- -UGGG-UCUUUGGUguc------GUCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 205062 0.66 0.991029
Target:  5'- gGCCCGGAc-CUACuGGCuGGAGAGcgGCGGc -3'
miRNA:   3'- -UGGGUCUuuGGUG-UCG-UCUCUC--UGCC- -5'
9164 3' -53.4 NC_002512.2 + 148420 0.66 0.991029
Target:  5'- uGCCUccugcGGGACCGcCGGgGGAG-GACGGg -3'
miRNA:   3'- -UGGGu----CUUUGGU-GUCgUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 58624 0.66 0.991029
Target:  5'- aGCCCAGAuAUgGCAG-AGAGcAGACu- -3'
miRNA:   3'- -UGGGUCUuUGgUGUCgUCUC-UCUGcc -5'
9164 3' -53.4 NC_002512.2 + 75537 0.66 0.991029
Target:  5'- cACCCucGAcGCCGUGGCGGAG-GACGa -3'
miRNA:   3'- -UGGGu-CUuUGGUGUCGUCUCuCUGCc -5'
9164 3' -53.4 NC_002512.2 + 220202 0.66 0.991029
Target:  5'- cCCCGccGggGCCcgACGGCGGcccgGGGGACGa -3'
miRNA:   3'- uGGGU--CuuUGG--UGUCGUC----UCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 212881 0.66 0.991029
Target:  5'- cUCCGGAGACgGCGGCcauGGAccGAGuCGGc -3'
miRNA:   3'- uGGGUCUUUGgUGUCG---UCU--CUCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 32927 0.66 0.990912
Target:  5'- uACCUGGAGGCCGucgagcagcaauuCGGCAcaacacgccGGGAGACGu -3'
miRNA:   3'- -UGGGUCUUUGGU-------------GUCGU---------CUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 59339 0.66 0.990674
Target:  5'- gACCUGGAcgcggAGCUGCAGCGGAucggggaagagaacGuGGCGGa -3'
miRNA:   3'- -UGGGUCU-----UUGGUGUCGUCU--------------CuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 94260 0.66 0.990674
Target:  5'- gACCCGGAcccccGAgaacucgcuggcguCCACGGcCGGGGAG-CGGu -3'
miRNA:   3'- -UGGGUCU-----UU--------------GGUGUC-GUCUCUCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 98786 0.66 0.990309
Target:  5'- gGCCCGGcgcACCACgucagguaccccggcGGcCGGAGcGACGGa -3'
miRNA:   3'- -UGGGUCuu-UGGUG---------------UC-GUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 136862 0.66 0.990185
Target:  5'- cGCCUccguguGGAACCACAGCugcccguccgccaccGAGACGGc -3'
miRNA:   3'- -UGGGu-----CUUUGGUGUCGucu------------CUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 131806 0.66 0.989804
Target:  5'- gACCCc-GAACgCGCAGaagaAGAGAGuGCGGa -3'
miRNA:   3'- -UGGGucUUUG-GUGUCg---UCUCUC-UGCC- -5'
9164 3' -53.4 NC_002512.2 + 36556 0.66 0.989804
Target:  5'- aGCCCGuu--CCGCuggAGCcGGGAGGCGGc -3'
miRNA:   3'- -UGGGUcuuuGGUG---UCGuCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 153 0.66 0.989804
Target:  5'- --gCGGAGGagGCGGCAG-GAGGCGGc -3'
miRNA:   3'- uggGUCUUUggUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 97190 0.66 0.989804
Target:  5'- cGCCCAcGAcGCCcgucuGCGGCGGcGGGcCGGg -3'
miRNA:   3'- -UGGGU-CUuUGG-----UGUCGUCuCUCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 229556 0.66 0.989804
Target:  5'- --gCGGAGGagGCGGCAG-GAGGCGGc -3'
miRNA:   3'- uggGUCUUUggUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 139728 0.66 0.989804
Target:  5'- cAUCCAGGAGCaGCAGUGGcGGGACc- -3'
miRNA:   3'- -UGGGUCUUUGgUGUCGUCuCUCUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.