miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9185 3' -62.3 NC_002512.2 + 121042 0.66 0.805164
Target:  5'- gCCGcCGUCccgccGCCC-CCGCCgacggccgcCGAGUCCa -3'
miRNA:   3'- -GGCaGCAGc----CGGGaGGUGG---------GCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 99936 0.66 0.805164
Target:  5'- gCGgCGUCGGCUgcugCUgCCGCCgGuGCCUg -3'
miRNA:   3'- gGCaGCAGCCGG----GA-GGUGGgCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 102218 0.66 0.805164
Target:  5'- gCCG-CGgccggagCGGCCCUCgACCgGccGUCCg -3'
miRNA:   3'- -GGCaGCa------GCCGGGAGgUGGgCu-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 127562 0.66 0.805164
Target:  5'- cUCGUCGUCcgggaGGCCCgacggaccgUCCGCgaCGucGCCCu -3'
miRNA:   3'- -GGCAGCAG-----CCGGG---------AGGUGg-GCu-CGGG- -5'
9185 3' -62.3 NC_002512.2 + 97758 0.66 0.804353
Target:  5'- gCgGUCGUcuugcucgCGGCCUaCCGggcggccCUCGAGCCCc -3'
miRNA:   3'- -GgCAGCA--------GCCGGGaGGU-------GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 15568 0.66 0.804353
Target:  5'- -aGUCGUCGGCCUgcucgugcggCACgCCGAagacgaaggugaaGCCCu -3'
miRNA:   3'- ggCAGCAGCCGGGag--------GUG-GGCU-------------CGGG- -5'
9185 3' -62.3 NC_002512.2 + 116954 0.66 0.802727
Target:  5'- aCCGgCGUC-GCCgUCCGCuccgcgagcgggagCCGGGUCCu -3'
miRNA:   3'- -GGCaGCAGcCGGgAGGUG--------------GGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 80426 0.66 0.800278
Target:  5'- gCUGUCGgCGGCgucccggguccccuuCCUCUcccCCCGcGCCCg -3'
miRNA:   3'- -GGCAGCaGCCG---------------GGAGGu--GGGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 19643 0.66 0.797818
Target:  5'- uCCGcgaggCGagGGCCCgacgcgagcgcgaggCCG-CCGAGCCCc -3'
miRNA:   3'- -GGCa----GCagCCGGGa--------------GGUgGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 25112 0.66 0.796996
Target:  5'- uCgGUCGg-GGCCgCgUCCGCCgccgaccggccgCGGGCCCg -3'
miRNA:   3'- -GgCAGCagCCGG-G-AGGUGG------------GCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 58216 0.66 0.796996
Target:  5'- uUCGUCGcccUCuucGCCCgCCGCgCCGcGCCCg -3'
miRNA:   3'- -GGCAGC---AGc--CGGGaGGUG-GGCuCGGG- -5'
9185 3' -62.3 NC_002512.2 + 119336 0.66 0.796996
Target:  5'- uCCGcCG-CGauGUUCUCCucCCCGAGUCCg -3'
miRNA:   3'- -GGCaGCaGC--CGGGAGGu-GGGCUCGGG- -5'
9185 3' -62.3 NC_002512.2 + 68235 0.66 0.796996
Target:  5'- cUCG-CGcCGGCCCUCC-UCCGGcggacGCCa -3'
miRNA:   3'- -GGCaGCaGCCGGGAGGuGGGCU-----CGGg -5'
9185 3' -62.3 NC_002512.2 + 9197 0.66 0.796996
Target:  5'- aCCGUCGgaaCGcGCUCUUCAUcgCCGA-CCCg -3'
miRNA:   3'- -GGCAGCa--GC-CGGGAGGUG--GGCUcGGG- -5'
9185 3' -62.3 NC_002512.2 + 22383 0.66 0.796996
Target:  5'- cUCGUCGUCGGUCgcggaUCCGgagaCGGGCgCCg -3'
miRNA:   3'- -GGCAGCAGCCGGg----AGGUgg--GCUCG-GG- -5'
9185 3' -62.3 NC_002512.2 + 82676 0.66 0.796996
Target:  5'- cCCcUCGUC--CCCUCCGCCgCGGGaCCa -3'
miRNA:   3'- -GGcAGCAGccGGGAGGUGG-GCUCgGG- -5'
9185 3' -62.3 NC_002512.2 + 28823 0.66 0.796996
Target:  5'- cCCGcacaUGUgGGCCCggucgauccgCCugCUGAGCCg -3'
miRNA:   3'- -GGCa---GCAgCCGGGa---------GGugGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 132034 0.66 0.796996
Target:  5'- uCCGUC-UCGGUcgucgCCUCCGcuuccCCCGcgccGCCCu -3'
miRNA:   3'- -GGCAGcAGCCG-----GGAGGU-----GGGCu---CGGG- -5'
9185 3' -62.3 NC_002512.2 + 27523 0.66 0.796996
Target:  5'- gCGUCGgaggCGGCUCagaCCAaUCGAGCCg -3'
miRNA:   3'- gGCAGCa---GCCGGGa--GGUgGGCUCGGg -5'
9185 3' -62.3 NC_002512.2 + 107059 0.66 0.796996
Target:  5'- aCCGUCG-CGG-CCUCCAUCuCGuuCUCg -3'
miRNA:   3'- -GGCAGCaGCCgGGAGGUGG-GCucGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.