miRNA display CGI


Results 41 - 60 of 736 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 73390 0.74 0.161095
Target:  5'- gCCCAGGCCGCCgUGuCCGCCCaGCccGCCg -3'
miRNA:   3'- -GGGUCCGGUGG-GCcGGCGGG-CGc-CGG- -5'
9186 3' -68.4 NC_002512.2 + 58041 0.76 0.12819
Target:  5'- uCCC-GGCCGCggCCGGaCCGuCCCGCGGUa -3'
miRNA:   3'- -GGGuCCGGUG--GGCC-GGC-GGGCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 72728 0.83 0.04101
Target:  5'- gCCCAcGCCGCCCGGCCcgccGCCCGCcccgGGCCc -3'
miRNA:   3'- -GGGUcCGGUGGGCCGG----CGGGCG----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 2247 0.74 0.160731
Target:  5'- aCCCGGGCgcuccguCGCCUGaccucgccgccGCCGCCCGCccuccGGCCg -3'
miRNA:   3'- -GGGUCCG-------GUGGGC-----------CGGCGGGCG-----CCGG- -5'
9186 3' -68.4 NC_002512.2 + 139217 0.88 0.017906
Target:  5'- gCCCuGGCCGCCgCGGCCGCcgacuccgagaCCGCGGCCg -3'
miRNA:   3'- -GGGuCCGGUGG-GCCGGCG-----------GGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 134102 0.73 0.197024
Target:  5'- cCCCGGcGCCuaccGCUCGGaCGCCCccguccagGCGGCCg -3'
miRNA:   3'- -GGGUC-CGG----UGGGCCgGCGGG--------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 69049 0.81 0.056111
Target:  5'- gCCCAGcGCCG-CCGGCCGCCCGCcuGCUg -3'
miRNA:   3'- -GGGUC-CGGUgGGCCGGCGGGCGc-CGG- -5'
9186 3' -68.4 NC_002512.2 + 25135 0.73 0.196588
Target:  5'- cCCCAGGCCgggaucgcugagcACCCGGguccggccccCCGCCC-CgGGCCc -3'
miRNA:   3'- -GGGUCCGG-------------UGGGCC----------GGCGGGcG-CCGG- -5'
9186 3' -68.4 NC_002512.2 + 2192 0.73 0.19271
Target:  5'- gCCCccGCCGCCgucgucgucuCGGUCGCCgGCGGCg -3'
miRNA:   3'- -GGGucCGGUGG----------GCCGGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 116676 0.73 0.176273
Target:  5'- cCCCGGGCgaggACCCGGCuccCGCUCGCGGa- -3'
miRNA:   3'- -GGGUCCGg---UGGGCCG---GCGGGCGCCgg -5'
9186 3' -68.4 NC_002512.2 + 7674 0.73 0.175092
Target:  5'- cCCCGacGGCCACCCcgacGaagaaacggacgacGCCGgCCGCGGCCc -3'
miRNA:   3'- -GGGU--CCGGUGGG----C--------------CGGCgGGCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 112007 0.74 0.164776
Target:  5'- -aCGGGCC-CCCGGCgucCGuCuuGCGGCCg -3'
miRNA:   3'- ggGUCCGGuGGGCCG---GC-GggCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 137350 0.74 0.164404
Target:  5'- gCCGcGGCCGCCgCGGCCGgguagauCCgCGCGGUCu -3'
miRNA:   3'- gGGU-CCGGUGG-GCCGGC-------GG-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 8117 0.74 0.157489
Target:  5'- gCCAGGaCACgaCGGCCGCCCaGCuGCCg -3'
miRNA:   3'- gGGUCCgGUGg-GCCGGCGGG-CGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 2389 0.74 0.153956
Target:  5'- cCCCGGGUCgcggcgucuccuACcuccucgcggCCGGCCGCCCcCGGCCu -3'
miRNA:   3'- -GGGUCCGG------------UG----------GGCCGGCGGGcGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 103497 0.74 0.150495
Target:  5'- gCCCGGGgC-CCCGGgCGCUCucccggGCGGCCa -3'
miRNA:   3'- -GGGUCCgGuGGGCCgGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 36672 0.75 0.147105
Target:  5'- cCCCAGGCUGCCgGGCaacggcgaGCCgaagaCGCGGUCg -3'
miRNA:   3'- -GGGUCCGGUGGgCCGg-------CGG-----GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 91993 0.77 0.104003
Target:  5'- gUCCGGGUCuCCCGcGUCGCCgGCGGCg -3'
miRNA:   3'- -GGGUCCGGuGGGC-CGGCGGgCGCCGg -5'
9186 3' -68.4 NC_002512.2 + 9578 0.78 0.092489
Target:  5'- gCCC-GGCC-CCCGGCCcCCCGgCGGCUc -3'
miRNA:   3'- -GGGuCCGGuGGGCCGGcGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 3143 0.79 0.071275
Target:  5'- gUCC-GGCCggaGCCCGGUcccgccgucguCGCCCGCGGCCu -3'
miRNA:   3'- -GGGuCCGG---UGGGCCG-----------GCGGGCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.