miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 3' -62.9 NC_002512.2 + 122120 0.66 0.725801
Target:  5'- gUCGGCC--GCGCUggacagCGUGGACgUGCGg -3'
miRNA:   3'- aAGCUGGccCGCGA------GCGCCUGgACGC- -5'
9198 3' -62.9 NC_002512.2 + 70112 0.66 0.725801
Target:  5'- --aGGCCGGGCGCgaagaccaGCGuGACCgacuccggGCa -3'
miRNA:   3'- aagCUGGCCCGCGag------CGC-CUGGa-------CGc -5'
9198 3' -62.9 NC_002512.2 + 103313 0.66 0.725801
Target:  5'- --aGAuCCGGGCGUUCGCcaggacGACCgaGCGu -3'
miRNA:   3'- aagCU-GGCCCGCGAGCGc-----CUGGa-CGC- -5'
9198 3' -62.9 NC_002512.2 + 142068 0.66 0.725801
Target:  5'- -cCGGCCGGGggauCGCUCGgGGgugcaACCgaacGCGg -3'
miRNA:   3'- aaGCUGGCCC----GCGAGCgCC-----UGGa---CGC- -5'
9198 3' -62.9 NC_002512.2 + 92636 0.66 0.725801
Target:  5'- -gCGGCCGccGGCGC-CG-GGACCcGCGc -3'
miRNA:   3'- aaGCUGGC--CCGCGaGCgCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 161504 0.66 0.725801
Target:  5'- --gGACCuGGuGCGCUgCGCGGACg-GCa -3'
miRNA:   3'- aagCUGG-CC-CGCGA-GCGCCUGgaCGc -5'
9198 3' -62.9 NC_002512.2 + 214407 0.66 0.725801
Target:  5'- cUUCgGGCCGGaGCGCgccgCGCccgaGGACC-GCGu -3'
miRNA:   3'- -AAG-CUGGCC-CGCGa---GCG----CCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 121066 0.66 0.725801
Target:  5'- -cCGcCCGaGGCGCggaggaaGCGGACCcacGCGg -3'
miRNA:   3'- aaGCuGGC-CCGCGag-----CGCCUGGa--CGC- -5'
9198 3' -62.9 NC_002512.2 + 155019 0.66 0.725801
Target:  5'- gUCGucCCGGGUGCgguuccggaGCGGAUC-GCGa -3'
miRNA:   3'- aAGCu-GGCCCGCGag-------CGCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 227195 0.66 0.716574
Target:  5'- -gCGGCa-GGCGCUcccgcgCGCGGACCaggagGCGg -3'
miRNA:   3'- aaGCUGgcCCGCGA------GCGCCUGGa----CGC- -5'
9198 3' -62.9 NC_002512.2 + 180550 0.66 0.716574
Target:  5'- gUCGAUC-GGCGCUUGCGGcgggcuCCgGUGg -3'
miRNA:   3'- aAGCUGGcCCGCGAGCGCCu-----GGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 227425 0.66 0.716574
Target:  5'- cUCGcGCgCGGGCGCgggcCGCGGucACCUucGCGc -3'
miRNA:   3'- aAGC-UG-GCCCGCGa---GCGCC--UGGA--CGC- -5'
9198 3' -62.9 NC_002512.2 + 90940 0.66 0.716574
Target:  5'- -gCGACCgGGGCGUgCGUGGGC--GCGa -3'
miRNA:   3'- aaGCUGG-CCCGCGaGCGCCUGgaCGC- -5'
9198 3' -62.9 NC_002512.2 + 84789 0.66 0.716574
Target:  5'- gUCGGCCGGcagccGCGacgcCUCGCGGAacucgucgauCUUGCGu -3'
miRNA:   3'- aAGCUGGCC-----CGC----GAGCGCCU----------GGACGC- -5'
9198 3' -62.9 NC_002512.2 + 32566 0.66 0.716574
Target:  5'- -cCG-CCGGGCGC-CGCGGguGCCgggGUc -3'
miRNA:   3'- aaGCuGGCCCGCGaGCGCC--UGGa--CGc -5'
9198 3' -62.9 NC_002512.2 + 80703 0.66 0.716574
Target:  5'- -gCGuCCGGGgGgCgagggcgCGCGGGCCcGCGg -3'
miRNA:   3'- aaGCuGGCCCgC-Ga------GCGCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 60753 0.66 0.716574
Target:  5'- -gCGGCCGGGCGgaCGaGGAgC-GCGa -3'
miRNA:   3'- aaGCUGGCCCGCgaGCgCCUgGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 196753 0.66 0.707284
Target:  5'- cUCGACCGgcGGCGUguacUGCuacGACCUGCa -3'
miRNA:   3'- aAGCUGGC--CCGCGa---GCGc--CUGGACGc -5'
9198 3' -62.9 NC_002512.2 + 9674 0.66 0.707284
Target:  5'- cUCGucccCCGGGcCGC-CGuCGGGCCccgGCGg -3'
miRNA:   3'- aAGCu---GGCCC-GCGaGC-GCCUGGa--CGC- -5'
9198 3' -62.9 NC_002512.2 + 221158 0.66 0.69794
Target:  5'- gUCGACgggCGGGCGCgCGCGG-CCgacCGa -3'
miRNA:   3'- aAGCUG---GCCCGCGaGCGCCuGGac-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.