miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 26532 0.66 0.928652
Target:  5'- gCgGCCUggucgGCAGCUCGcccgAGGGcugcaagaucgcggcCCUGGCCu -3'
miRNA:   3'- aGgUGGA-----CGUCGAGC----UCCU---------------GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 206560 0.66 0.926618
Target:  5'- aCCGCCgGCGGCcCGGGGcGCCaGaACUg -3'
miRNA:   3'- aGGUGGaCGUCGaGCUCC-UGGaC-UGG- -5'
9198 5' -57.6 NC_002512.2 + 134082 0.66 0.926618
Target:  5'- aCCGgCUGCgcugggcgAGCUaCGAGGcgacgauaaGCCUGACg -3'
miRNA:   3'- aGGUgGACG--------UCGA-GCUCC---------UGGACUGg -5'
9198 5' -57.6 NC_002512.2 + 107917 0.66 0.926618
Target:  5'- cCCGCCgGCGGg-CGGGGACCcgGGUCa -3'
miRNA:   3'- aGGUGGaCGUCgaGCUCCUGGa-CUGG- -5'
9198 5' -57.6 NC_002512.2 + 124385 0.66 0.926618
Target:  5'- gUCCugCgcgagagGCuggucgucgacgGGCUCGAGGACgUcGCCa -3'
miRNA:   3'- -AGGugGa------CG------------UCGAGCUCCUGgAcUGG- -5'
9198 5' -57.6 NC_002512.2 + 113677 0.66 0.926618
Target:  5'- -gCACCUucGuCAGCUCGAccgccuGCCUGGCCc -3'
miRNA:   3'- agGUGGA--C-GUCGAGCUcc----UGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 90947 0.66 0.926618
Target:  5'- gCCGCCgucgugguggUGguGCUCGugcuGGGAcuguuCCUGAUCg -3'
miRNA:   3'- aGGUGG----------ACguCGAGC----UCCU-----GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 141767 0.66 0.926618
Target:  5'- aUCCGCCgcgccgUGCAGgaCagGAGGACCacguUGAUCu -3'
miRNA:   3'- -AGGUGG------ACGUCgaG--CUCCUGG----ACUGG- -5'
9198 5' -57.6 NC_002512.2 + 69067 0.66 0.925068
Target:  5'- cCCGCCUGCugguGC-CGGGGcggcugguacugcuGCCgUGGCUg -3'
miRNA:   3'- aGGUGGACGu---CGaGCUCC--------------UGG-ACUGG- -5'
9198 5' -57.6 NC_002512.2 + 59571 0.66 0.921376
Target:  5'- aCCugCUGCAGCUCcacuucaAGGACau--CCa -3'
miRNA:   3'- aGGugGACGUCGAGc------UCCUGgacuGG- -5'
9198 5' -57.6 NC_002512.2 + 193261 0.66 0.921376
Target:  5'- -aCGCCUGCGcgcccuGcCUCGGcGACCUGugCu -3'
miRNA:   3'- agGUGGACGU------C-GAGCUcCUGGACugG- -5'
9198 5' -57.6 NC_002512.2 + 211604 0.66 0.921376
Target:  5'- cUCCGCCgagaAGCUCaaccuGGACCUcGCCu -3'
miRNA:   3'- -AGGUGGacg-UCGAGcu---CCUGGAcUGG- -5'
9198 5' -57.6 NC_002512.2 + 59480 0.66 0.921376
Target:  5'- cUCGCCaGCGGguCUCGAGcGGCCUGGa- -3'
miRNA:   3'- aGGUGGaCGUC--GAGCUC-CUGGACUgg -5'
9198 5' -57.6 NC_002512.2 + 83258 0.66 0.921376
Target:  5'- gCCGCCaGCAGCUgGcGGAUCgucGGCa -3'
miRNA:   3'- aGGUGGaCGUCGAgCuCCUGGa--CUGg -5'
9198 5' -57.6 NC_002512.2 + 221836 0.66 0.921376
Target:  5'- gUCCgACCcGCGGgggcgcCUCG-GGACCggGACCu -3'
miRNA:   3'- -AGG-UGGaCGUC------GAGCuCCUGGa-CUGG- -5'
9198 5' -57.6 NC_002512.2 + 118714 0.66 0.921376
Target:  5'- cCCGCCUGCcGCUCGccGGcGACgUG-CUg -3'
miRNA:   3'- aGGUGGACGuCGAGC--UC-CUGgACuGG- -5'
9198 5' -57.6 NC_002512.2 + 135258 0.66 0.921376
Target:  5'- gUCCGCgCcGC-GCUCGAcGaGGCCUGgGCCg -3'
miRNA:   3'- -AGGUG-GaCGuCGAGCU-C-CUGGAC-UGG- -5'
9198 5' -57.6 NC_002512.2 + 148875 0.66 0.921376
Target:  5'- cUCCGCCUGCgcaAGCUgcugcagcccuaCGGGGccaGCCUGuuCu -3'
miRNA:   3'- -AGGUGGACG---UCGA------------GCUCC---UGGACugG- -5'
9198 5' -57.6 NC_002512.2 + 138207 0.66 0.918126
Target:  5'- aUCCGCCUcguguucaucucguaGCGGCUgGAGGucaccACCUucACCg -3'
miRNA:   3'- -AGGUGGA---------------CGUCGAgCUCC-----UGGAc-UGG- -5'
9198 5' -57.6 NC_002512.2 + 122261 0.66 0.915914
Target:  5'- uUCC-CCgGCGGCcgCGGGGAcguCCUGgaGCCc -3'
miRNA:   3'- -AGGuGGaCGUCGa-GCUCCU---GGAC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.