miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9224 3' -56.6 NC_002512.2 + 195835 0.66 0.955972
Target:  5'- cGUCGUgggGCACG-CCUCGAGcaaccGGCGc -3'
miRNA:   3'- uCAGCGa--CGUGCaGGGGCUCuu---CUGC- -5'
9224 3' -56.6 NC_002512.2 + 68908 0.66 0.955972
Target:  5'- cGGUCguGCUGCugGccgccgcggCCUCGGGggGAUc -3'
miRNA:   3'- -UCAG--CGACGugCa--------GGGGCUCuuCUGc -5'
9224 3' -56.6 NC_002512.2 + 20611 0.66 0.955972
Target:  5'- cAG-CGCUcCACGUCCUCGaAGGAGGucCGg -3'
miRNA:   3'- -UCaGCGAcGUGCAGGGGC-UCUUCU--GC- -5'
9224 3' -56.6 NC_002512.2 + 50951 0.66 0.955972
Target:  5'- aAGaUGCUGaaaCACGUCCCCGuGGAaaacgccucgguGACGg -3'
miRNA:   3'- -UCaGCGAC---GUGCAGGGGCuCUU------------CUGC- -5'
9224 3' -56.6 NC_002512.2 + 82009 0.66 0.955972
Target:  5'- cGGUCGCgGCGagcCGUCgCCCGGGucGGgGu -3'
miRNA:   3'- -UCAGCGaCGU---GCAG-GGGCUCuuCUgC- -5'
9224 3' -56.6 NC_002512.2 + 124188 0.66 0.955972
Target:  5'- ---gGCUGCuCGUCCgCCGGGGacagAGGCa -3'
miRNA:   3'- ucagCGACGuGCAGG-GGCUCU----UCUGc -5'
9224 3' -56.6 NC_002512.2 + 130340 0.66 0.955972
Target:  5'- uAG-CGCacauggGCACGaCCCCGGGcGGACc -3'
miRNA:   3'- -UCaGCGa-----CGUGCaGGGGCUCuUCUGc -5'
9224 3' -56.6 NC_002512.2 + 92403 0.66 0.955972
Target:  5'- cAGUuccCGCUGCugGauccgaUCCCCGAGGAc--- -3'
miRNA:   3'- -UCA---GCGACGugC------AGGGGCUCUUcugc -5'
9224 3' -56.6 NC_002512.2 + 94278 0.66 0.955972
Target:  5'- -cUCGCUG-GCGUCCacggCCGGGGAG-CGg -3'
miRNA:   3'- ucAGCGACgUGCAGG----GGCUCUUCuGC- -5'
9224 3' -56.6 NC_002512.2 + 204808 0.66 0.955972
Target:  5'- aGGUcCGCgucccggggGCGCGgcggcUCCguCCGGGAGGACGa -3'
miRNA:   3'- -UCA-GCGa--------CGUGC-----AGG--GGCUCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 125032 0.66 0.95179
Target:  5'- --cCGCUGCGCGaggucccUCCCCGccgcuccagccgGGAcgGGACGu -3'
miRNA:   3'- ucaGCGACGUGC-------AGGGGC------------UCU--UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 103118 0.66 0.950605
Target:  5'- cGUCGCcGCcgccgccGCG-CCCCGAGGcgucucgggccaagAGGCGa -3'
miRNA:   3'- uCAGCGaCG-------UGCaGGGGCUCU--------------UCUGC- -5'
9224 3' -56.6 NC_002512.2 + 209516 0.66 0.948177
Target:  5'- --cCGCUGuUACGUCUacagCGAGGAGACc -3'
miRNA:   3'- ucaGCGAC-GUGCAGGg---GCUCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 207779 0.66 0.948177
Target:  5'- uGGUUGCgggacgGCGuCGUCuCCCGGccGGACGa -3'
miRNA:   3'- -UCAGCGa-----CGU-GCAG-GGGCUcuUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 48093 0.66 0.948177
Target:  5'- aGGUCGCUGCugACGggcaaCCGggcgcuGGAGGACGu -3'
miRNA:   3'- -UCAGCGACG--UGCagg--GGC------UCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 135303 0.66 0.948177
Target:  5'- cAGuUCGcCUGUccgGCgGUCCCCGAGGucGGCGu -3'
miRNA:   3'- -UC-AGC-GACG---UG-CAGGGGCUCUu-CUGC- -5'
9224 3' -56.6 NC_002512.2 + 24788 0.66 0.948177
Target:  5'- gGGUCcggGCGCG-CCCCccGAGGACGg -3'
miRNA:   3'- -UCAGcgaCGUGCaGGGGcuCUUCUGC- -5'
9224 3' -56.6 NC_002512.2 + 30579 0.66 0.948177
Target:  5'- cGGUaa--GCGCGUCCUgGAGGAGGCc -3'
miRNA:   3'- -UCAgcgaCGUGCAGGGgCUCUUCUGc -5'
9224 3' -56.6 NC_002512.2 + 205621 0.66 0.947765
Target:  5'- cGUCGCcGC-CGUCcuuccugCCCGcGGggGACGc -3'
miRNA:   3'- uCAGCGaCGuGCAG-------GGGC-UCuuCUGC- -5'
9224 3' -56.6 NC_002512.2 + 67957 0.66 0.943957
Target:  5'- gGGUCGCgccgGUucgccgugGCGUCCgCCGgaGGAGGGCc -3'
miRNA:   3'- -UCAGCGa---CG--------UGCAGG-GGC--UCUUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.