miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9244 5' -56.1 NC_002512.2 + 7288 0.66 0.956204
Target:  5'- gGCCCCGGggGCCGGACaGGccUCCUccGcGACGg -3'
miRNA:   3'- -CGGGGCU--UGGUCUG-CU--AGGA--C-CUGUu -5'
9244 5' -56.1 NC_002512.2 + 84173 0.66 0.953934
Target:  5'- gGUCCCGGuccagguucggcgggACCAGGCGGcgcagccacucgUCCgcGGACAGg -3'
miRNA:   3'- -CGGGGCU---------------UGGUCUGCU------------AGGa-CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 141715 0.66 0.952377
Target:  5'- cGUCCCGGACgC-GACcGUCCcGGGCGAc -3'
miRNA:   3'- -CGGGGCUUG-GuCUGcUAGGaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 134985 0.66 0.952377
Target:  5'- uGCCCgGcGACCgGGACGccuacccguucGUCCUGGAgGAu -3'
miRNA:   3'- -CGGGgC-UUGG-UCUGC-----------UAGGACCUgUU- -5'
9244 5' -56.1 NC_002512.2 + 23331 0.66 0.952377
Target:  5'- cGCCCCGGGCCGccGGCGGUgUacgagUGcGGCGAg -3'
miRNA:   3'- -CGGGGCUUGGU--CUGCUAgG-----AC-CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 119850 0.66 0.952377
Target:  5'- -aCCCGuACgAGACGAagcUgCUGGACAc -3'
miRNA:   3'- cgGGGCuUGgUCUGCU---AgGACCUGUu -5'
9244 5' -56.1 NC_002512.2 + 194656 0.66 0.952377
Target:  5'- uCUCCG-AUCGGGCGGUCCUGcACGc -3'
miRNA:   3'- cGGGGCuUGGUCUGCUAGGACcUGUu -5'
9244 5' -56.1 NC_002512.2 + 95740 0.66 0.951982
Target:  5'- uCCCCGccGGCCGggacgcgcgccgcGACGGccgCCUGGACGGg -3'
miRNA:   3'- cGGGGC--UUGGU-------------CUGCUa--GGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 135243 0.66 0.951982
Target:  5'- cGCCUCGAggccgucguccgcGCCGcgcucGACGAggCCUGGGCc- -3'
miRNA:   3'- -CGGGGCU-------------UGGU-----CUGCUa-GGACCUGuu -5'
9244 5' -56.1 NC_002512.2 + 123683 0.66 0.951982
Target:  5'- gGCCgCGGACCGGAUGAUcgccaacCCgaaGGACc- -3'
miRNA:   3'- -CGGgGCUUGGUCUGCUA-------GGa--CCUGuu -5'
9244 5' -56.1 NC_002512.2 + 186964 0.66 0.948331
Target:  5'- cCCCCGcucCCGGGCcGUCCUGG-CGGu -3'
miRNA:   3'- cGGGGCuu-GGUCUGcUAGGACCuGUU- -5'
9244 5' -56.1 NC_002512.2 + 131084 0.66 0.948331
Target:  5'- cGCUCCGGccGCCGG--GGUaCCUGGACGu -3'
miRNA:   3'- -CGGGGCU--UGGUCugCUA-GGACCUGUu -5'
9244 5' -56.1 NC_002512.2 + 124950 0.66 0.948331
Target:  5'- cGCgCCGAcGCCGGACGAggaggCCgucgcGGACu- -3'
miRNA:   3'- -CGgGGCU-UGGUCUGCUa----GGa----CCUGuu -5'
9244 5' -56.1 NC_002512.2 + 195746 0.66 0.945798
Target:  5'- cGCUCCGAggucgucgGCCGGAUccuggggaccaacguGAgCCUGGACGu -3'
miRNA:   3'- -CGGGGCU--------UGGUCUG---------------CUaGGACCUGUu -5'
9244 5' -56.1 NC_002512.2 + 34823 0.66 0.944064
Target:  5'- uCCCCG-ACCGGACGAcCCUcccgcccgcGGGCc- -3'
miRNA:   3'- cGGGGCuUGGUCUGCUaGGA---------CCUGuu -5'
9244 5' -56.1 NC_002512.2 + 83051 0.66 0.944064
Target:  5'- aCCCUGGGCCAGGCGA-CCUcGcGCGc -3'
miRNA:   3'- cGGGGCUUGGUCUGCUaGGA-CcUGUu -5'
9244 5' -56.1 NC_002512.2 + 127617 0.66 0.944064
Target:  5'- cGCgCCGAGCCgagauGGACGAcgCCcGGACc- -3'
miRNA:   3'- -CGgGGCUUGG-----UCUGCUa-GGaCCUGuu -5'
9244 5' -56.1 NC_002512.2 + 95513 0.66 0.944064
Target:  5'- cGUCCCGGACCu--CGAacagcUCgUGGACGGu -3'
miRNA:   3'- -CGGGGCUUGGucuGCU-----AGgACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 108479 0.66 0.944064
Target:  5'- cGCgCUGAACguGACGGUCgUcaaGGGCGAg -3'
miRNA:   3'- -CGgGGCUUGguCUGCUAGgA---CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 21691 0.66 0.944064
Target:  5'- cGCCCCccgaucucaaGAGCCAGGCGAac--GGGCAu -3'
miRNA:   3'- -CGGGG----------CUUGGUCUGCUaggaCCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.