miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 117824 0.66 0.791146
Target:  5'- uCGC-GGCGGaCC-GACGUCCugGAc- -3'
miRNA:   3'- -GCGuCCGCCgGGaCUGCGGGugCUuc -5'
9246 5' -61.6 NC_002512.2 + 213675 0.66 0.791146
Target:  5'- gCGgAGGgGaGCCCggcGuCGCCCGCGGu- -3'
miRNA:   3'- -GCgUCCgC-CGGGa--CuGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 211247 0.66 0.791146
Target:  5'- gCGUcgAGGCGGCCgUcGACGCCauguuCGAc- -3'
miRNA:   3'- -GCG--UCCGCCGGgA-CUGCGGgu---GCUuc -5'
9246 5' -61.6 NC_002512.2 + 113209 0.66 0.791146
Target:  5'- aGCGGGagccgGGUCCU--CGCCCGgGGAGa -3'
miRNA:   3'- gCGUCCg----CCGGGAcuGCGGGUgCUUC- -5'
9246 5' -61.6 NC_002512.2 + 87537 0.66 0.791146
Target:  5'- -uCAGGuCGaCCCUGAgGUCCAgGAGGg -3'
miRNA:   3'- gcGUCC-GCcGGGACUgCGGGUgCUUC- -5'
9246 5' -61.6 NC_002512.2 + 32087 0.66 0.791146
Target:  5'- uCGCcgauGGCGGCCCgGGUGUCCucgcgguCGAGGu -3'
miRNA:   3'- -GCGu---CCGCCGGGaCUGCGGGu------GCUUC- -5'
9246 5' -61.6 NC_002512.2 + 82709 0.66 0.791146
Target:  5'- gCGCGGcGCgGGCCCgcguuccGGCGUCUaauacuGCGAGGg -3'
miRNA:   3'- -GCGUC-CG-CCGGGa------CUGCGGG------UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 111108 0.66 0.791146
Target:  5'- cCGCccGGCGGCg--GAggcgcCGCCCGCGggGu -3'
miRNA:   3'- -GCGu-CCGCCGggaCU-----GCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 32690 0.66 0.782556
Target:  5'- cCGUAGaCGGCCCcGAgcggGUCCAUGAGGa -3'
miRNA:   3'- -GCGUCcGCCGGGaCUg---CGGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 97619 0.66 0.782556
Target:  5'- cCGCuGGCGGCggaccuaccgCCUGACGCagcuCGAGa -3'
miRNA:   3'- -GCGuCCGCCG----------GGACUGCGggu-GCUUc -5'
9246 5' -61.6 NC_002512.2 + 54635 0.66 0.782556
Target:  5'- cCGCcgAGcGCGGCCCUGGCGaCgAUGGu- -3'
miRNA:   3'- -GCG--UC-CGCCGGGACUGCgGgUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 84270 0.66 0.782556
Target:  5'- gGCGGGCagcgGGCCga-ACGCCCGCcuGGAGg -3'
miRNA:   3'- gCGUCCG----CCGGgacUGCGGGUG--CUUC- -5'
9246 5' -61.6 NC_002512.2 + 89587 0.66 0.782556
Target:  5'- gGCGGGUGGCgggaUGucgcgggaACGUCCGCGggGc -3'
miRNA:   3'- gCGUCCGCCGgg--AC--------UGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 148517 0.66 0.782556
Target:  5'- aGgAGGCGGCCgCcgccCGCCCcggccGCGAGGg -3'
miRNA:   3'- gCgUCCGCCGG-Gacu-GCGGG-----UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 50843 0.66 0.773848
Target:  5'- cCGgAuGaCGGCgCUGACGUCCGCGGAc -3'
miRNA:   3'- -GCgUcC-GCCGgGACUGCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 119717 0.66 0.773848
Target:  5'- gGCcGGcCGGCCgUG-CGCCCGCa--- -3'
miRNA:   3'- gCGuCC-GCCGGgACuGCGGGUGcuuc -5'
9246 5' -61.6 NC_002512.2 + 29174 0.66 0.773848
Target:  5'- cCGcCGGGCGGCagCCcGACGCCaCcCGAGa -3'
miRNA:   3'- -GC-GUCCGCCG--GGaCUGCGG-GuGCUUc -5'
9246 5' -61.6 NC_002512.2 + 26715 0.66 0.773848
Target:  5'- gGCuGGCGuCCCUGAUGUgCGCGucGc -3'
miRNA:   3'- gCGuCCGCcGGGACUGCGgGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 140060 0.66 0.773848
Target:  5'- uGCAGcGCGGUCUcGACGUCCucuCGGc- -3'
miRNA:   3'- gCGUC-CGCCGGGaCUGCGGGu--GCUuc -5'
9246 5' -61.6 NC_002512.2 + 146598 0.66 0.773848
Target:  5'- aCGaacGGCGGCCCcaGACGCCUcugcugccgACGAu- -3'
miRNA:   3'- -GCgu-CCGCCGGGa-CUGCGGG---------UGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.