miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 127559 0.65 0.661965
Target:  5'- cGGCUcgucguccgggagGCCCGacggaCCGucCGCGacgucGCCCUGGCg -3'
miRNA:   3'- -UCGA-------------UGGGC-----GGCucGCGC-----CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 222369 0.66 0.653476
Target:  5'- gGGCcGCCUuccCCG-GCG-GGCUCUGGCu -3'
miRNA:   3'- -UCGaUGGGc--GGCuCGCgCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 32080 0.66 0.653476
Target:  5'- gGGggGgUCGCCGAugGCGGCCCgGGUg -3'
miRNA:   3'- -UCgaUgGGCGGCUcgCGCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 54840 0.66 0.653476
Target:  5'- cGCggaACCgGCCGAGCGCgaaGGCCaccaaGCu -3'
miRNA:   3'- uCGa--UGGgCGGCUCGCG---CCGGgac--CG- -5'
9249 3' -64.4 NC_002512.2 + 229581 0.66 0.653476
Target:  5'- gAGgaGgCCGgaGGGCGUGggcuGCCCUGGCc -3'
miRNA:   3'- -UCgaUgGGCggCUCGCGC----CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 102496 0.66 0.653476
Target:  5'- cGGCgucguuCCCGCCgcggGAGuCGCGGCCgUcGGg -3'
miRNA:   3'- -UCGau----GGGCGG----CUC-GCGCCGGgA-CCg -5'
9249 3' -64.4 NC_002512.2 + 178 0.66 0.653476
Target:  5'- gAGgaGgCCGgaGGGCGUGggcuGCCCUGGCc -3'
miRNA:   3'- -UCgaUgGGCggCUCGCGC----CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 116477 0.66 0.653476
Target:  5'- cGCUGCaCCaagaGCaagagggaGAGCGCGcgcaacGCCCUGGUc -3'
miRNA:   3'- uCGAUG-GG----CGg-------CUCGCGC------CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 28212 0.66 0.653476
Target:  5'- cGGCcGCCCucGCCGAagaaggaacCGCGGCCggGGCc -3'
miRNA:   3'- -UCGaUGGG--CGGCUc--------GCGCCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 150732 0.66 0.653476
Target:  5'- uGGaCUuCCCGUCGGcccgcGCGCGGCCCa--- -3'
miRNA:   3'- -UC-GAuGGGCGGCU-----CGCGCCGGGaccg -5'
9249 3' -64.4 NC_002512.2 + 213211 0.66 0.653476
Target:  5'- uGGuCUGggaCCGCCGGGuCGUGGCCgCcaacGGCg -3'
miRNA:   3'- -UC-GAUg--GGCGGCUC-GCGCCGG-Ga---CCG- -5'
9249 3' -64.4 NC_002512.2 + 147862 0.66 0.653476
Target:  5'- cGGCgcgACCCcgacCCGGGCGaCGGCUCgccGCg -3'
miRNA:   3'- -UCGa--UGGGc---GGCUCGC-GCCGGGac-CG- -5'
9249 3' -64.4 NC_002512.2 + 126485 0.66 0.653476
Target:  5'- cGCgucGCCCggauccccggcGuuGGGCGCGaGCCuCUGGUc -3'
miRNA:   3'- uCGa--UGGG-----------CggCUCGCGC-CGG-GACCG- -5'
9249 3' -64.4 NC_002512.2 + 217691 0.66 0.652532
Target:  5'- gGGCUGgcucuucCCCGCCG-GCGUcgacgaGGUCCgcuucaggGGCg -3'
miRNA:   3'- -UCGAU-------GGGCGGCuCGCG------CCGGGa-------CCG- -5'
9249 3' -64.4 NC_002512.2 + 102310 0.66 0.652532
Target:  5'- cGcCUACaUCGCCGAGCGgcugggcCGGCUCcGGUa -3'
miRNA:   3'- uC-GAUG-GGCGGCUCGC-------GCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 206556 0.66 0.644031
Target:  5'- --gUACaCCGCCG---GCGGCCCggGGCg -3'
miRNA:   3'- ucgAUG-GGCGGCucgCGCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 106347 0.66 0.644031
Target:  5'- cGCUcguCCCG-CGAGCucgccaccucGCGGCCCgucaGGUg -3'
miRNA:   3'- uCGAu--GGGCgGCUCG----------CGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 119568 0.66 0.644031
Target:  5'- aGGUcacgUACUCGCUGAGCGUGauGCgCUGGa -3'
miRNA:   3'- -UCG----AUGGGCGGCUCGCGC--CGgGACCg -5'
9249 3' -64.4 NC_002512.2 + 9759 0.66 0.644031
Target:  5'- gAGCcggACCCGCCGccccGCGUGGC---GGCu -3'
miRNA:   3'- -UCGa--UGGGCGGCu---CGCGCCGggaCCG- -5'
9249 3' -64.4 NC_002512.2 + 18521 0.66 0.644031
Target:  5'- cAGCaUGCCgCGCCGGGCGgucaGGCCgc-GCg -3'
miRNA:   3'- -UCG-AUGG-GCGGCUCGCg---CCGGgacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.