miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 216328 0.66 0.748196
Target:  5'- cGGCCccgaCGCGGucGGCG-GCuCGAUCUUGGu -3'
miRNA:   3'- -CCGGa---GCGCC--CCGUgCG-GCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 79598 0.66 0.748196
Target:  5'- cGCCucuUCGCGGgcGGCAgCGCCGGgucgcgguaCUCGGc -3'
miRNA:   3'- cCGG---AGCGCC--CCGU-GCGGCUg--------GAGCC- -5'
9265 5' -63.6 NC_002512.2 + 3529 0.66 0.748196
Target:  5'- aGCC-CGCGGGGCcCGaaG-CC-CGGg -3'
miRNA:   3'- cCGGaGCGCCCCGuGCggCuGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 100294 0.66 0.748196
Target:  5'- gGGCgagUUCGUcgGGGGCGacgggGCCGacgucccggcGCCUCGGg -3'
miRNA:   3'- -CCG---GAGCG--CCCCGUg----CGGC----------UGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 32075 0.66 0.748196
Target:  5'- cGGCa--GgGGGGguCGCCGAUggCGGc -3'
miRNA:   3'- -CCGgagCgCCCCguGCGGCUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 6674 0.66 0.748196
Target:  5'- cGGCCgggaCGCGcuccGGgACGCCGuCCccgUCGGg -3'
miRNA:   3'- -CCGGa---GCGCc---CCgUGCGGCuGG---AGCC- -5'
9265 5' -63.6 NC_002512.2 + 72154 0.66 0.748196
Target:  5'- aGGCCUUGauGG--ACGCCGACUUCu- -3'
miRNA:   3'- -CCGGAGCgcCCcgUGCGGCUGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 96995 0.66 0.748196
Target:  5'- cGCgUCGCcGGGgACGCCGuCgUCGa -3'
miRNA:   3'- cCGgAGCGcCCCgUGCGGCuGgAGCc -5'
9265 5' -63.6 NC_002512.2 + 137089 0.66 0.748196
Target:  5'- aGGCC-CGCGGugugcgcccaGGCGCGCggggugCGAUCUCu- -3'
miRNA:   3'- -CCGGaGCGCC----------CCGUGCG------GCUGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 84807 0.66 0.748196
Target:  5'- cGCCUCGCGGaaCuCGUCGAUCUUGc -3'
miRNA:   3'- cCGGAGCGCCccGuGCGGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 179103 0.66 0.748196
Target:  5'- cGCCUCGUGGGuccugauCGCGUCGAUCgCGu -3'
miRNA:   3'- cCGGAGCGCCCc------GUGCGGCUGGaGCc -5'
9265 5' -63.6 NC_002512.2 + 220409 0.66 0.748196
Target:  5'- cGCCgcUCGC-GGGCcCGCCcGCCUaCGGc -3'
miRNA:   3'- cCGG--AGCGcCCCGuGCGGcUGGA-GCC- -5'
9265 5' -63.6 NC_002512.2 + 185509 0.66 0.748196
Target:  5'- gGGCUgCGCgGGGGCcUGCCGcuCUUCGa -3'
miRNA:   3'- -CCGGaGCG-CCCCGuGCGGCu-GGAGCc -5'
9265 5' -63.6 NC_002512.2 + 170373 0.66 0.748196
Target:  5'- gGGCCgugCGCGGcGcCGCGCUGcACUUCuGGc -3'
miRNA:   3'- -CCGGa--GCGCCcC-GUGCGGC-UGGAG-CC- -5'
9265 5' -63.6 NC_002512.2 + 126334 0.66 0.748196
Target:  5'- aGGCCgcCGCGuccgggacGGGCGCGCaCGACgCguucaCGGu -3'
miRNA:   3'- -CCGGa-GCGC--------CCCGUGCG-GCUG-Ga----GCC- -5'
9265 5' -63.6 NC_002512.2 + 108508 0.66 0.748196
Target:  5'- aGGCCggGCccGGCGC-CCGACCggcCGGg -3'
miRNA:   3'- -CCGGagCGccCCGUGcGGCUGGa--GCC- -5'
9265 5' -63.6 NC_002512.2 + 227472 0.66 0.748196
Target:  5'- aGGCCg---GGGGCG-GCCGGCCgcgaGGa -3'
miRNA:   3'- -CCGGagcgCCCCGUgCGGCUGGag--CC- -5'
9265 5' -63.6 NC_002512.2 + 131089 0.66 0.746436
Target:  5'- cGGCCgC-CGGGGUaccuggacgugguGCGCCGGgccaccuUCUCGGc -3'
miRNA:   3'- -CCGGaGcGCCCCG-------------UGCGGCU-------GGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 194623 0.66 0.739365
Target:  5'- cGGCCgucgcCGCGGGGgACcugcCCGuCCUCu- -3'
miRNA:   3'- -CCGGa----GCGCCCCgUGc---GGCuGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 112742 0.66 0.739365
Target:  5'- cGGCa-CGCGGaaGGCGgagaGCCGGCCguccCGGa -3'
miRNA:   3'- -CCGgaGCGCC--CCGUg---CGGCUGGa---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.