miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 175805 0.66 0.992599
Target:  5'- uGGCGGcGUCccGGcgGCUCCGcucguccgUGGCg -3'
miRNA:   3'- -CCGCCuCAGuuCCuaUGGGGUa-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 185876 0.66 0.992599
Target:  5'- -cCGGAG-CAAGGucACCCCcucaacgugUGGCg -3'
miRNA:   3'- ccGCCUCaGUUCCuaUGGGGua-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 118074 0.66 0.992599
Target:  5'- cGCGGAGg--GGGcgGCUCCGgcgccGGCg -3'
miRNA:   3'- cCGCCUCaguUCCuaUGGGGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 49065 0.66 0.992599
Target:  5'- cGGCGGAcGcCAAGGcgAUCCCGa--GCu -3'
miRNA:   3'- -CCGCCU-CaGUUCCuaUGGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 113289 0.66 0.992599
Target:  5'- aGGCgGGGGUCGugcAGGGcGCUCaCGUaGGCc -3'
miRNA:   3'- -CCG-CCUCAGU---UCCUaUGGG-GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 133317 0.66 0.992599
Target:  5'- aGGCGG-GagGAGGA--UCCUAUaaaUGGCg -3'
miRNA:   3'- -CCGCCuCagUUCCUauGGGGUA---ACCG- -5'
9281 3' -53.2 NC_002512.2 + 132104 0.66 0.992599
Target:  5'- cGGacCGGGGcUCGAGGGccGCCCgGUaGGCc -3'
miRNA:   3'- -CC--GCCUC-AGUUCCUa-UGGGgUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 160729 0.66 0.991548
Target:  5'- cGGgGGGGauuUCGGGGGgaacggcgccgGCCCCg--GGCa -3'
miRNA:   3'- -CCgCCUC---AGUUCCUa----------UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 34073 0.66 0.991548
Target:  5'- cGGCGGcGUCGAcGAUGuCCCCGca-GCg -3'
miRNA:   3'- -CCGCCuCAGUUcCUAU-GGGGUaacCG- -5'
9281 3' -53.2 NC_002512.2 + 177175 0.66 0.991548
Target:  5'- gGGCGGgaacgGGUCAGuuaucuGAUAUCCCucaaggUGGCu -3'
miRNA:   3'- -CCGCC-----UCAGUUc-----CUAUGGGGua----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 220987 0.66 0.991548
Target:  5'- uGGCcaggaGGGUCGAG--UGCCCCAacGGCu -3'
miRNA:   3'- -CCGc----CUCAGUUCcuAUGGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 156520 0.66 0.991548
Target:  5'- cGGCGGGGcgCGGGGG---UCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCa-GUUCCUaugGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 113605 0.66 0.990862
Target:  5'- gGGCGGGGUacugguggucCGucAGGGUGCUCCGcagcaccugcagggUGGCc -3'
miRNA:   3'- -CCGCCUCA----------GU--UCCUAUGGGGUa-------------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 180770 0.66 0.990381
Target:  5'- uGGCGuGcAGcCGGGcGAUGCCCCg--GGUg -3'
miRNA:   3'- -CCGC-C-UCaGUUC-CUAUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 152188 0.66 0.990381
Target:  5'- aGGacCGGGGUCcucGGAgaguggACCCCGguccUGGCc -3'
miRNA:   3'- -CC--GCCUCAGuu-CCUa-----UGGGGUa---ACCG- -5'
9281 3' -53.2 NC_002512.2 + 96 0.66 0.989092
Target:  5'- cGGCGGGGggaGAGGAgGCCggCAggaGGCg -3'
miRNA:   3'- -CCGCCUCag-UUCCUaUGGg-GUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 32206 0.66 0.989092
Target:  5'- gGGCGGGuGUCcguuGAGGAgggcguccACCUCGUcgGGCc -3'
miRNA:   3'- -CCGCCU-CAG----UUCCUa-------UGGGGUAa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 229500 0.66 0.989092
Target:  5'- cGGCGGGGggaGAGGAgGCCggCAggaGGCg -3'
miRNA:   3'- -CCGCCUCag-UUCCUaUGGg-GUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 37215 0.66 0.989092
Target:  5'- aGCGGuGUC-GGGAaaACUCCGUUGcGCc -3'
miRNA:   3'- cCGCCuCAGuUCCUa-UGGGGUAAC-CG- -5'
9281 3' -53.2 NC_002512.2 + 74829 0.66 0.989092
Target:  5'- cGGCGGAcgaacaacucgGuUCGAGGGgccUCCCGcgGGCg -3'
miRNA:   3'- -CCGCCU-----------C-AGUUCCUau-GGGGUaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.