miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 75757 0.66 0.93408
Target:  5'- -aGCGCG-CGUCGGAGAcCGCggaGCCc -3'
miRNA:   3'- ggCGUGCaGCGGCUUCUuGCGg--CGGu -5'
9298 3' -58 NC_002512.2 + 27963 0.66 0.93408
Target:  5'- -gGCcCGUCGCCGAu--GgGCgGCCGg -3'
miRNA:   3'- ggCGuGCAGCGGCUucuUgCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 89205 0.66 0.93408
Target:  5'- ---gGCGUUGUCGAAGGugGCCGg-- -3'
miRNA:   3'- ggcgUGCAGCGGCUUCUugCGGCggu -5'
9298 3' -58 NC_002512.2 + 93057 0.66 0.93408
Target:  5'- gCGagACGaCGCCGcGGGGCGUCGUCGu -3'
miRNA:   3'- gGCg-UGCaGCGGCuUCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 109078 0.66 0.93408
Target:  5'- cCCGCGCGccaggucCGUCGAcaccGugGCCGUCAg -3'
miRNA:   3'- -GGCGUGCa------GCGGCUuc--UugCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 159641 0.66 0.93408
Target:  5'- cCCGCGauucUCGCaGAcGAGCGCCGgCAc -3'
miRNA:   3'- -GGCGUgc--AGCGgCUuCUUGCGGCgGU- -5'
9298 3' -58 NC_002512.2 + 134765 0.66 0.93408
Target:  5'- aCCGUcCGguUCGUCGgcGGGC-CCGCCGu -3'
miRNA:   3'- -GGCGuGC--AGCGGCuuCUUGcGGCGGU- -5'
9298 3' -58 NC_002512.2 + 220558 0.66 0.93408
Target:  5'- aCGC-CGUCuaccugGCCGu---GCGCCGCCc -3'
miRNA:   3'- gGCGuGCAG------CGGCuucuUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 205570 0.66 0.93408
Target:  5'- -aGCcCGacCGCCGggGGACGCaguuCGCCc -3'
miRNA:   3'- ggCGuGCa-GCGGCuuCUUGCG----GCGGu -5'
9298 3' -58 NC_002512.2 + 117876 0.66 0.93408
Target:  5'- gCCGCaagACGgaCGCCGggGGccCGUCGCUg -3'
miRNA:   3'- -GGCG---UGCa-GCGGCuuCUu-GCGGCGGu -5'
9298 3' -58 NC_002512.2 + 135124 0.66 0.93408
Target:  5'- aCgGCGCGaCGCucCGAGGGccGgGCCGCCc -3'
miRNA:   3'- -GgCGUGCaGCG--GCUUCU--UgCGGCGGu -5'
9298 3' -58 NC_002512.2 + 215372 0.66 0.93408
Target:  5'- gUCGCGCGcuUCGCCGu----CGCCaGCCc -3'
miRNA:   3'- -GGCGUGC--AGCGGCuucuuGCGG-CGGu -5'
9298 3' -58 NC_002512.2 + 216209 0.66 0.93408
Target:  5'- gCCGCGgcCGUCGCCucguccGGGAGCuggaGCCGCg- -3'
miRNA:   3'- -GGCGU--GCAGCGGc-----UUCUUG----CGGCGgu -5'
9298 3' -58 NC_002512.2 + 95680 0.66 0.93408
Target:  5'- gCGCGCGUcCGCCGGgccuccggcgGGGACGggggGCCGg -3'
miRNA:   3'- gGCGUGCA-GCGGCU----------UCUUGCgg--CGGU- -5'
9298 3' -58 NC_002512.2 + 152782 0.66 0.93408
Target:  5'- cCCGCG-GUUcCCGGucGGAaaGCGCUGCCGg -3'
miRNA:   3'- -GGCGUgCAGcGGCU--UCU--UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 155693 0.66 0.93408
Target:  5'- aCGgACGUCGCCGcccugugccGGCGCCuCCAc -3'
miRNA:   3'- gGCgUGCAGCGGCuuc------UUGCGGcGGU- -5'
9298 3' -58 NC_002512.2 + 96614 0.66 0.933606
Target:  5'- -aGCGCGgagaCGCgggggagggCGAGGAaaccgcgaccgggGCGCCGCCGc -3'
miRNA:   3'- ggCGUGCa---GCG---------GCUUCU-------------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 110516 0.66 0.93313
Target:  5'- gCCGcCGCGUCGUccaccaucccgcgggCGGAGAAgGCCcggagcaccucggcgGCCAu -3'
miRNA:   3'- -GGC-GUGCAGCG---------------GCUUCUUgCGG---------------CGGU- -5'
9298 3' -58 NC_002512.2 + 34257 0.66 0.932171
Target:  5'- gCCGguCGUC-CCGucccgucuccagcAGGugGCCGCCc -3'
miRNA:   3'- -GGCguGCAGcGGCu------------UCUugCGGCGGu -5'
9298 3' -58 NC_002512.2 + 30528 0.66 0.931204
Target:  5'- gCUGCugGagccggugaucucguUCGCCGu-GGGCGCgGCCc -3'
miRNA:   3'- -GGCGugC---------------AGCGGCuuCUUGCGgCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.