miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9608 5' -56.3 NC_002577.1 + 118671 0.66 0.922806
Target:  5'- cCCCGAACucggaACGGUUCCAuacaGGUGCGu -3'
miRNA:   3'- aGGGUUUG-----UGCCGGGGUuag-CCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 140419 0.66 0.922806
Target:  5'- uUUCCGAGgGCgggGGCCCCcGUaccaggGGCGCGg -3'
miRNA:   3'- -AGGGUUUgUG---CCGGGGuUAg-----CCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 156918 0.66 0.922806
Target:  5'- uUUCCGAGgGCgggGGCCCCcGUaccaggGGCGCGg -3'
miRNA:   3'- -AGGGUUUgUG---CCGGGGuUAg-----CCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 154901 0.66 0.919498
Target:  5'- aCCCGAcagcaccuaccaggaGCGCGGUgCCGG-CGGCAg- -3'
miRNA:   3'- aGGGUU---------------UGUGCCGgGGUUaGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 142436 0.66 0.919498
Target:  5'- aCCCGAcagcaccuaccaggaGCGCGGUgCCGG-CGGCAg- -3'
miRNA:   3'- aGGGUU---------------UGUGCCGgGGUUaGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 112141 0.66 0.917246
Target:  5'- gUCCC-AACAauCGGCCaCCAucaCGGCAa- -3'
miRNA:   3'- -AGGGuUUGU--GCCGG-GGUua-GCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 159455 0.66 0.917246
Target:  5'- gUCCCcGugACGGCCgCGccCGGCGa- -3'
miRNA:   3'- -AGGGuUugUGCCGGgGUuaGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 137882 0.66 0.917246
Target:  5'- gUCCCcGugACGGCCgCGccCGGCGa- -3'
miRNA:   3'- -AGGGuUugUGCCGGgGUuaGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 3305 0.66 0.911452
Target:  5'- aUCUCAggcAGCACGGCaCCGAUCcggagaGCGCGu -3'
miRNA:   3'- -AGGGU---UUGUGCCGgGGUUAGc-----CGUGC- -5'
9608 5' -56.3 NC_002577.1 + 130309 0.66 0.911452
Target:  5'- aUCUCAggcAGCACGGCaCCGAUCcggagaGCGCGu -3'
miRNA:   3'- -AGGGU---UUGUGCCGgGGUUAGc-----CGUGC- -5'
9608 5' -56.3 NC_002577.1 + 136674 0.66 0.911452
Target:  5'- gCCCAAAUACcgacucuguGGCgUCAgccGUUGGCGCGu -3'
miRNA:   3'- aGGGUUUGUG---------CCGgGGU---UAGCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 16785 0.66 0.911452
Target:  5'- gUCCAGGCAUuGaCCUUAAUCGGgACGg -3'
miRNA:   3'- aGGGUUUGUGcC-GGGGUUAGCCgUGC- -5'
9608 5' -56.3 NC_002577.1 + 88318 0.66 0.911452
Target:  5'- aUCCCGuauaGGC-CGGCCCaCGuaagaGGCACa -3'
miRNA:   3'- -AGGGU----UUGuGCCGGG-GUuag--CCGUGc -5'
9608 5' -56.3 NC_002577.1 + 8831 0.66 0.909669
Target:  5'- cCCCAAcuaacccuucgcgcGCACcgcgGGCCUCGGcgCGGUACGu -3'
miRNA:   3'- aGGGUU--------------UGUG----CCGGGGUUa-GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 124783 0.66 0.909669
Target:  5'- cCCCAAcuaacccuucgcgcGCACcgcgGGCCUCGGcgCGGUACGu -3'
miRNA:   3'- aGGGUU--------------UGUG----CCGGGGUUa-GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 160664 0.66 0.905427
Target:  5'- gCCCAAAUACcgacuuguGGCgUCAgccGUUGGCGCGu -3'
miRNA:   3'- aGGGUUUGUG--------CCGgGGU---UAGCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 73187 0.66 0.905427
Target:  5'- cCCCGccgaACGGCCUUGAUUuGCACGg -3'
miRNA:   3'- aGGGUuug-UGCCGGGGUUAGcCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 83804 0.66 0.905427
Target:  5'- uUCCCGGACAuCGGCgaugaUCuGUCGGUGCu -3'
miRNA:   3'- -AGGGUUUGU-GCCGg----GGuUAGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 574 0.66 0.905427
Target:  5'- aCCCGGGCAacuuguaccCGGCCCCGAgCGucucugugcaacGCACu -3'
miRNA:   3'- aGGGUUUGU---------GCCGGGGUUaGC------------CGUGc -5'
9608 5' -56.3 NC_002577.1 + 133040 0.66 0.905427
Target:  5'- aCCCGGGCAacuuguaccCGGCCCCGAgCGucucugugcaacGCACu -3'
miRNA:   3'- aGGGUUUGU---------GCCGGGGUUaGC------------CGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.