miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9616 5' -53 NC_002577.1 + 105962 0.66 0.98
Target:  5'- --aGAGcGGCCGCGCUGgGaa-GGCCg -3'
miRNA:   3'- aggUUUaUCGGCGCGGCgUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 160346 0.66 0.98
Target:  5'- gCCGucgAGaacCCGCGuCCGCGUUUGGg- -3'
miRNA:   3'- aGGUuuaUC---GGCGC-GGCGUAAACCgg -5'
9616 5' -53 NC_002577.1 + 21336 0.66 0.98
Target:  5'- cCCuguUGGCUGCGaauuuCaCAUUUGGCCu -3'
miRNA:   3'- aGGuuuAUCGGCGCg----GcGUAAACCGG- -5'
9616 5' -53 NC_002577.1 + 136992 0.66 0.98
Target:  5'- gCCGucgAGaacCCGCGuCCGCGUUUGGg- -3'
miRNA:   3'- aGGUuuaUC---GGCGC-GGCGUAAACCgg -5'
9616 5' -53 NC_002577.1 + 161513 0.66 0.977685
Target:  5'- cCCuuGUGGCCGgGC-GCcagaGGCCg -3'
miRNA:   3'- aGGuuUAUCGGCgCGgCGuaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 135825 0.66 0.977685
Target:  5'- cCCuuGUGGCCGgGC-GCcagaGGCCg -3'
miRNA:   3'- aGGuuUAUCGGCgCGgCGuaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 6936 0.66 0.975179
Target:  5'- cCCGuuUGGCCGguggaugaGUCGCGa-UGGCCg -3'
miRNA:   3'- aGGUuuAUCGGCg-------CGGCGUaaACCGG- -5'
9616 5' -53 NC_002577.1 + 66035 0.66 0.975179
Target:  5'- gCCAAAU-GCgGCGCgGCuAUUUGGa- -3'
miRNA:   3'- aGGUUUAuCGgCGCGgCG-UAAACCgg -5'
9616 5' -53 NC_002577.1 + 151343 0.66 0.975179
Target:  5'- aCCAAGUAcGCgGCGCUGUAacuugaGGCg -3'
miRNA:   3'- aGGUUUAU-CGgCGCGGCGUaaa---CCGg -5'
9616 5' -53 NC_002577.1 + 126678 0.66 0.975179
Target:  5'- cCCGuuUGGCCGguggaugaGUCGCGa-UGGCCg -3'
miRNA:   3'- aGGUuuAUCGGCg-------CGGCGUaaACCGG- -5'
9616 5' -53 NC_002577.1 + 15879 0.66 0.975179
Target:  5'- cUCGAGUGGuUCGUGuuGC---UGGCCg -3'
miRNA:   3'- aGGUUUAUC-GGCGCggCGuaaACCGG- -5'
9616 5' -53 NC_002577.1 + 97960 0.66 0.972473
Target:  5'- -gCAAuUGGCgGcCGCCGCAgcUGGUa -3'
miRNA:   3'- agGUUuAUCGgC-GCGGCGUaaACCGg -5'
9616 5' -53 NC_002577.1 + 15904 0.66 0.972473
Target:  5'- aCCAGAUAuUCGCGCCaaGUUUGGg- -3'
miRNA:   3'- aGGUUUAUcGGCGCGGcgUAAACCgg -5'
9616 5' -53 NC_002577.1 + 139458 0.66 0.969561
Target:  5'- cUCGAcugcAGCCgGCGCCGCGgc-GGCUu -3'
miRNA:   3'- aGGUUua--UCGG-CGCGGCGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 157879 0.66 0.969561
Target:  5'- cUCGAcugcAGCCgGCGCCGCGgc-GGCUu -3'
miRNA:   3'- aGGUUua--UCGG-CGCGGCGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 84944 0.66 0.969561
Target:  5'- aUCAAucAGuuGCgGCCGCGUaagUGGCg -3'
miRNA:   3'- aGGUUuaUCggCG-CGGCGUAa--ACCGg -5'
9616 5' -53 NC_002577.1 + 27970 0.66 0.966111
Target:  5'- -gCGAuuAUGGCCaGUGCCGgAUcugugacgggaguUUGGCCg -3'
miRNA:   3'- agGUU--UAUCGG-CGCGGCgUA-------------AACCGG- -5'
9616 5' -53 NC_002577.1 + 134052 0.67 0.96309
Target:  5'- uUCCGGGcGGCCuagcgaGCGCCcGCGc--GGCCg -3'
miRNA:   3'- -AGGUUUaUCGG------CGCGG-CGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 158978 0.67 0.96309
Target:  5'- gCCGGccGGCCgGUGCUGguUcgGGCCu -3'
miRNA:   3'- aGGUUuaUCGG-CGCGGCguAaaCCGG- -5'
9616 5' -53 NC_002577.1 + 107532 0.67 0.96309
Target:  5'- uUCUgcggAGCCGUaGCUGCug-UGGCCc -3'
miRNA:   3'- -AGGuuuaUCGGCG-CGGCGuaaACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.