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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29101 | - | 128090 | 89 | 20.5 | -25.5 | YP_068000 | 5' arm 3' arm | ||
| 29102 | - | 128507 | 89 | 21 | -23.7 | YP_068000 | 5' arm 3' arm | ||
| 28860 | + | 126923 | 87 | 22 | -22.3 | YP_067999 | 5' arm 3' arm | ||
| 29099 | - | 126600 | 90 | 19.5 | -23.7 | YP_067999 | 5' arm 3' arm | ||
| 28859 | + | 125197 | 89 | 20.5 | -24 | YP_067998 | 5' arm 3' arm | ||
| 29097 | - | 126017 | 90 | 21 | -22.3 | YP_067998 | 5' arm 3' arm | ||
| 29096 | - | 125285 | 89 | 23 | -23.9 | YP_067998 | 5' arm 3' arm | ||
| 29098 | - | 126276 | 89 | 23 | -29.4 | YP_067998 | 5' arm 3' arm | ||
| 29095 | - | 123158 | 90 | 21.5 | -27.6 | YP_067997 | 5' arm 3' arm | ||
| 28855 | + | 122865 | 90 | 24 | -20.2 | YP_067997 | 5' arm 3' arm | ||
| 28857 | + | 123332 | 90 | 21 | -20.5 | YP_067997 | 5' arm 3' arm | ||
| 28856 | + | 123133 | 90 | 21 | -23.6 | YP_067997 | 5' arm 3' arm | ||
| 28858 | + | 124212 | 84 | 21.5 | -24.2 | YP_067997 | 5' arm 3' arm | ||
| 29094 | - | 121420 | 88 | 19.5 | -21.5 | YP_067996 | 5' arm 3' arm | ||
| 29093 | - | 121316 | 88 | 21 | -26 | YP_067995 | 5' arm 3' arm | ||
| 28854 | + | 119878 | 87 | 19 | -21.04 | YP_067995 | 5' arm 3' arm | ||
| 29090 | - | 120698 | 89 | 19.5 | -20.31 | YP_067995 | 5' arm 3' arm | ||
| 29091 | - | 120917 | 89 | 26 | -31.4 | YP_067995 | 5' arm 3' arm | ||
| 29089 | - | 119843 | 90 | 22 | -22.8 | YP_067995 | 5' arm 3' arm | ||
| 29092 | - | 121020 | 89 | 21.5 | -25.1 | YP_067995 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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