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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6978 | - | 85566 | 88 | 23 | -23.1 | NP_046258 | 5' arm 3' arm | ||
| 6766 | + | 39246 | 88 | 23 | -29.6 | NP_046205 | 5' arm 3' arm | ||
| 6863 | + | 117729 | 88 | 23 | -19.7 | 5' arm 3' arm | |||
| 7025 | - | 130407 | 88 | 23 | -19.4 | 5' arm 3' arm | |||
| 7029 | - | 131790 | 87 | 23 | -20.2 | NP_046308 | 5' arm 3' arm | ||
| 6778 | + | 45131 | 89 | 23 | -23.7 | NP_046210 | 5' arm 3' arm | ||
| 6774 | + | 42701 | 90 | 23 | -36.8 | NP_046209 | 5' arm 3' arm | ||
| 6850 | + | 102180 | 90 | 23 | -24.5 | NP_046280 | 5' arm 3' arm | ||
| 6829 | + | 89332 | 90 | 23 | -28 | NP_046262 | 5' arm 3' arm | ||
| 6834 | + | 91745 | 89 | 23 | -27.9 | NP_046265 | 5' arm 3' arm | ||
| 7002 | - | 104196 | 82 | 22.5 | -23.1 | NP_046281 | 5' arm 3' arm | ||
| 7010 | - | 113516 | 89 | 22.5 | -20.9 | NP_046290 | 5' arm 3' arm | ||
| 6742 | + | 17768 | 88 | 22.5 | -25.5 | NP_046177 | 5' arm 3' arm | ||
| 6809 | + | 72887 | 90 | 22.5 | -20.6 | NP_046246 | 5' arm 3' arm | ||
| 6784 | + | 54067 | 90 | 22.5 | -22.6 | NP_046225 | 5' arm 3' arm | ||
| 6985 | - | 95380 | 88 | 22.5 | -23.6 | 5' arm 3' arm | |||
| 6857 | + | 114218 | 87 | 22.5 | -22.1 | NP_046290 | 5' arm 3' arm | ||
| 6788 | + | 57947 | 90 | 22.5 | -29.9 | NP_046227 | 5' arm 3' arm | ||
| 6872 | + | 128466 | 88 | 22.5 | -25 | 5' arm 3' arm | |||
| 7000 | - | 103038 | 90 | 22.5 | -24.8 | NP_046280 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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