miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1162	+	44789	88	22.5	-20.6	NP_051758		5' arm      3' arm
1166	+	134626	90	22.5	-24.19	NP_051852		5' arm      3' arm
1152	+	596	87	22.5	-23.5			5' arm      3' arm
1170	+	142342	89	22	-24.1	NP_051861		5' arm      3' arm
1174	+	153698	87	22	-23.8	NP_051872		5' arm      3' arm
1189	-	8076	87	22	-23.8	NP_051872		5' arm      3' arm
1198	-	127664	90	21.5	-30.6	NP_051848		5' arm      3' arm
1196	-	112242	89	21.5	-20.91	NP_051828		5' arm      3' arm
1180	+	159232	83	21.5	-24.9	NP_051879		5' arm      3' arm
1204	-	148441	89	21.5	-21.4	NP_051865		5' arm      3' arm
1183	-	2542	83	21.5	-24.9	NP_051713		5' arm      3' arm
1178	+	158529	90	21	-23.7	NP_051714		5' arm      3' arm
1185	-	3245	90	21	-23.7	NP_051714		5' arm      3' arm
1205	-	150540	73	21	-25.1	NP_051722		5' arm      3' arm
1159	+	11234	73	21	-25.1	NP_051870		5' arm      3' arm
1165	+	127575	87	20.5	-19.8	NP_051848		5' arm      3' arm
1157	+	6955	87	20.5	-21.2	NP_051719		5' arm      3' arm
1197	-	119760	90	20.5	-23	NP_051840		5' arm      3' arm
1188	-	5238	86	20.5	-20.1	NP_051718		5' arm      3' arm
1175	+	156536	86	20.5	-20.1	NP_051718		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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