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GenBank Identifier | RefSeq Acc. | Name |
29366701 | NC_004665.1 | Pseudomonas phage gh-1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
17966 | + | 1830 | 89 | 21 | -25.1 | NP_813747 | 5' arm 3' arm | ||
17967 | + | 3047 | 90 | 21 | -23.3 | NP_813747 | 5' arm 3' arm | ||
17969 | + | 4387 | 86 | 19.5 | -25.3 | NP_813750 | 5' arm 3' arm | ||
17974 | + | 8954 | 90 | 25.5 | -21.5 | NP_813759 | 5' arm 3' arm | ||
17973 | + | 6463 | 89 | 23 | -27.1 | NP_813752 | 5' arm 3' arm | ||
17970 | + | 4952 | 89 | 21 | -27 | NP_813751 | 5' arm 3' arm | ||
17971 | + | 5199 | 90 | 21 | -21 | NP_813751 | 5' arm 3' arm | ||
17972 | + | 6023 | 90 | 20.5 | -24.6 | NP_813753 | 5' arm 3' arm | ||
17977 | + | 12667 | 90 | 22.5 | -21.4 | NP_813764 | 5' arm 3' arm | ||
17978 | + | 13670 | 88 | 19 | -23.8 | NP_813764 | 5' arm 3' arm | ||
17975 | + | 9312 | 86 | 25 | -28.7 | NP_813759 | 5' arm 3' arm | ||
17994 | - | 528 | 82 | 22.5 | -26.4 | 5' arm 3' arm | |||
18023 | - | 25111 | 88 | 23 | -24.9 | NP_813778 | 5' arm 3' arm | ||
18026 | - | 29171 | 87 | 19 | -23.4 | NP_813780 | 5' arm 3' arm | ||
18025 | - | 29005 | 88 | 19.5 | -21.9 | NP_813780 | 5' arm 3' arm | ||
18027 | - | 30813 | 90 | 23 | -21.7 | NP_813780 | 5' arm 3' arm | ||
18031 | - | 35195 | 89 | 19.5 | -25.8 | NP_813786 | 5' arm 3' arm | ||
18029 | - | 34499 | 90 | 20.5 | -20.2 | NP_813785 | 5' arm 3' arm | ||
18030 | - | 34639 | 83 | 21 | -20.7 | NP_813785 | 5' arm 3' arm | ||
18028 | - | 32831 | 85 | 22.5 | -21.6 | NP_813781 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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