miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22788711 NC_004156.1 Heliothis zea virus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16646 + 106958 88 20 -24.3 NP_690491 5' arm      3' arm
16647 + 109996 86 21 -24 NP_690494 5' arm      3' arm
16648 + 112029 90 24.5 -21.7 NP_690494 5' arm      3' arm
16649 + 122878 85 29.5 -27.3 NP_690502 5' arm      3' arm
16650 + 123043 89 24 -24.7 NP_690502 5' arm      3' arm
16651 + 143798 87 19.5 -21 NP_690517 5' arm      3' arm
16652 + 146304 89 23 -26.3 NP_690519 5' arm      3' arm
16653 + 170034 90 21 -30 NP_690534 5' arm      3' arm
16654 + 175542 84 25.5 -22.5 NP_690538 5' arm      3' arm
16655 + 180844 89 19 -22.31 NP_690542 5' arm      3' arm
16656 + 201860 86 20.5 -24.1 5' arm      3' arm
16657 + 207380 86 19.5 -25.9 NP_690559 5' arm      3' arm
16658 + 214110 86 20 -20.6 NP_690564 5' arm      3' arm
16659 + 217171 89 22 -24.5 NP_690567 5' arm      3' arm
16660 + 222971 88 25.5 -28.94 NP_690573 5' arm      3' arm
16661 - 9152 89 23 -20.6 NP_690423 5' arm      3' arm
16662 - 15878 88 22.5 -23.9 NP_690428 5' arm      3' arm
16663 - 25453 86 20.5 -28.5 NP_690438 5' arm      3' arm
16664 - 41446 87 22.5 -22.7 NP_690450 5' arm      3' arm
16665 - 44807 85 22.5 -30.1 NP_690455 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.