miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
16634	+	57664	84	19	-21.4	NP_690460		5' arm      3' arm
16668	-	57896	88	21	-27.6	NP_690460		5' arm      3' arm
16669	-	58885	87	26.5	-30.7	NP_690462		5' arm      3' arm
16636	+	62672	86	21.5	-21.46	NP_690465		5' arm      3' arm
16670	-	63859	89	21	-21.6	NP_690466		5' arm      3' arm
16637	+	67380	90	24	-22.4	NP_690469		5' arm      3' arm
16671	-	72925	81	29	-21.6	NP_690471		5' arm      3' arm
16638	+	75421	85	20.5	-22.5	NP_690473		5' arm      3' arm
16672	-	76897	89	19.5	-24.4	NP_690474		5' arm      3' arm
16639	+	78886	90	19.5	-22.1	NP_690476		5' arm      3' arm
16673	-	80567	90	24	-19.4	NP_690477		5' arm      3' arm
16640	+	81086	89	21	-20	NP_690477		5' arm      3' arm
16674	-	84631	90	21	-20.3	NP_690479		5' arm      3' arm
16641	+	90262	87	23.5	-23.8	NP_690481		5' arm      3' arm
16642	+	92159	79	20	-24.7	NP_690481		5' arm      3' arm
16675	-	90349	90	21	-20.53	NP_690481		5' arm      3' arm
16676	-	96293	89	21.5	-22	NP_690486		5' arm      3' arm
16643	+	99501	90	21	-24.5	NP_690488		5' arm      3' arm
16645	+	103109	90	24	-21	NP_690489		5' arm      3' arm
16644	+	101712	89	21	-20.2	NP_690489		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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