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GenBank Identifier | RefSeq Acc. | Name |
58042841 | NC_005137.2 | Choristoneura fumiferana defective nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
22855 | + | 2425 | 89 | 19 | -21.5 | NP_932614 | 5' arm 3' arm | ||
22856 | + | 5069 | 80 | 19.5 | -20.1 | NP_932618 | 5' arm 3' arm | ||
22857 | + | 7306 | 89 | 20.5 | -21.8 | NP_932619 | 5' arm 3' arm | ||
22858 | + | 7427 | 90 | 21 | -21.6 | NP_932619 | 5' arm 3' arm | ||
22859 | + | 9199 | 88 | 21.5 | -24.79 | NP_932621 | 5' arm 3' arm | ||
22860 | + | 11951 | 85 | 20.5 | -19.61 | NP_932625 | 5' arm 3' arm | ||
22861 | + | 12938 | 89 | 19.5 | -24.3 | NP_932625 | 5' arm 3' arm | ||
22862 | + | 17455 | 89 | 23.5 | -23.5 | NP_932630 | 5' arm 3' arm | ||
22863 | + | 20545 | 90 | 19.5 | -25.9 | NP_932635 | 5' arm 3' arm | ||
22864 | + | 24576 | 88 | 20.5 | -26.9 | NP_932640 | 5' arm 3' arm | ||
22865 | + | 25479 | 89 | 21.5 | -20.1 | NP_932641 | 5' arm 3' arm | ||
22866 | + | 26646 | 90 | 21 | -30.1 | NP_932642 | 5' arm 3' arm | ||
22867 | + | 27480 | 90 | 20 | -19.9 | NP_932644 | 5' arm 3' arm | ||
22868 | + | 31713 | 88 | 21 | -27.3 | NP_932650 | 5' arm 3' arm | ||
22869 | + | 32234 | 88 | 22 | -31 | NP_932651 | 5' arm 3' arm | ||
22870 | + | 32914 | 83 | 20.5 | -30.7 | NP_932651 | 5' arm 3' arm | ||
22871 | + | 33756 | 88 | 24 | -19.7 | NP_932652 | 5' arm 3' arm | ||
22872 | + | 33904 | 90 | 21.5 | -19.5 | NP_932653 | 5' arm 3' arm | ||
22873 | + | 35560 | 90 | 19 | -21.3 | NP_932654 | 5' arm 3' arm | ||
22874 | + | 47343 | 88 | 21 | -20.5 | NP_932668 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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