miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 3401 0.66 0.950248
Target:  5'- cGGCACUuccgccgGCGGGCUGAagaGC--GCGCGg -3'
miRNA:   3'- aCCGUGA-------CGUCUGGCUg--UGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 64958 0.66 0.950248
Target:  5'- cGGCACUGUguacucguccacgAGccGCCGcaGCGCGUGCAgGu -3'
miRNA:   3'- aCCGUGACG-------------UC--UGGC--UGUGUAUGUgC- -5'
23819 3' -53.3 NC_005261.1 + 47663 0.66 0.946305
Target:  5'- cGGCcaGCcGCAGcGCCGAgCGCA-GCACGg -3'
miRNA:   3'- aCCG--UGaCGUC-UGGCU-GUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 37208 0.66 0.946305
Target:  5'- cGGCGCUacuguggcucccGCGGGCUuGCGCGgcgcgGCGCGu -3'
miRNA:   3'- aCCGUGA------------CGUCUGGcUGUGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 16075 0.66 0.946305
Target:  5'- cGGCGCgUGUAGACgaaguacgcggCGGCACcgGCGgCGg -3'
miRNA:   3'- aCCGUG-ACGUCUG-----------GCUGUGuaUGU-GC- -5'
23819 3' -53.3 NC_005261.1 + 118679 0.66 0.946305
Target:  5'- gGGCg--GCGGgcGCUGGCGCAcGCGCGg -3'
miRNA:   3'- aCCGugaCGUC--UGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 62832 0.66 0.946305
Target:  5'- gGGCACcgGCgggGGACUGGCGCGcccCGCGc -3'
miRNA:   3'- aCCGUGa-CG---UCUGGCUGUGUau-GUGC- -5'
23819 3' -53.3 NC_005261.1 + 34212 0.66 0.946305
Target:  5'- cGGCGC-GuCGGACgCgGACGCAgACGCGg -3'
miRNA:   3'- aCCGUGaC-GUCUG-G-CUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 42047 0.66 0.945854
Target:  5'- cGGUACUGCGccgaaucGugCGcCGCAUugAUGa -3'
miRNA:   3'- aCCGUGACGU-------CugGCuGUGUAugUGC- -5'
23819 3' -53.3 NC_005261.1 + 40400 0.67 0.941688
Target:  5'- aGGacaCGCUGCGcGACagGGcCACGUACACGg -3'
miRNA:   3'- aCC---GUGACGU-CUGg-CU-GUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 89082 0.67 0.941688
Target:  5'- cUGGUaccgGCUGCGGcCCGgGCGCGcugGCGCGc -3'
miRNA:   3'- -ACCG----UGACGUCuGGC-UGUGUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 97155 0.67 0.941688
Target:  5'- cUGGCGCcgGCccGGCCGGCugGguCGCGg -3'
miRNA:   3'- -ACCGUGa-CGu-CUGGCUGugUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 36762 0.67 0.941688
Target:  5'- cUGGCGCcccUGCAcGCCGGCcCGUGCGu- -3'
miRNA:   3'- -ACCGUG---ACGUcUGGCUGuGUAUGUgc -5'
23819 3' -53.3 NC_005261.1 + 88192 0.67 0.941688
Target:  5'- cGGCGCcggcgagGCGGGCCG-CGCcgGCAa- -3'
miRNA:   3'- aCCGUGa------CGUCUGGCuGUGuaUGUgc -5'
23819 3' -53.3 NC_005261.1 + 15746 0.67 0.941688
Target:  5'- -cGCGC-GCAGGCCGACcgccucgccGCgAUACACa -3'
miRNA:   3'- acCGUGaCGUCUGGCUG---------UG-UAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 103506 0.67 0.941688
Target:  5'- cGGCGCcGCGGA-CGGCgGCGUcCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUgGCUG-UGUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 97233 0.67 0.941688
Target:  5'- cUGGCGCcgGCccGGCCGGCugGguCGCGg -3'
miRNA:   3'- -ACCGUGa-CGu-CUGGCUGugUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44731 0.67 0.936822
Target:  5'- gGGCGCUGCAGcugggccCCGA-GC-UGCGCGc -3'
miRNA:   3'- aCCGUGACGUCu------GGCUgUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 32441 0.67 0.936822
Target:  5'- cGGC-CUGgGcGCCGGCACAgucacccccggGCACGg -3'
miRNA:   3'- aCCGuGACgUcUGGCUGUGUa----------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 106920 0.67 0.936822
Target:  5'- gGcGCGCUGCAgGGCCGccagcgACACGcGCACc -3'
miRNA:   3'- aC-CGUGACGU-CUGGC------UGUGUaUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.